View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_low_6 (Length: 587)
Name: NF9173_low_6
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 21 - 580
Target Start/End: Complemental strand, 49133533 - 49132979
Alignment:
| Q |
21 |
actgtaacataactggtaggcaagaccaagaaaagaagaaatacagaatcccaagcgaacccccatgaactnnnnnnnn-ttataaccttcacatgcaaa |
119 |
Q |
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| T |
49133533 |
actgtaacataactggtaggcaagaccaagaaaagaagaaatacagaatcccaagcgaacccccatgaactaaaaaaaaattataaccttcacatgcaaa |
49133434 |
T |
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| Q |
120 |
aggtaatagctgagttataataagatgatcaaattatttccacgacgaacaataaaagtcaagatcagtttccataatcaataatactgttgacacataa |
219 |
Q |
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| T |
49133433 |
aggtaatagctgagttataataagatgatcaaattatttccacgacgaacaataaaagtcaagatcagtttccataatcaataatactgttgacacataa |
49133334 |
T |
|
| Q |
220 |
cgtcagacatcaatgatgaaaattgttcaccaactttggatcaagtaaagtaatggatagacacacagctaaatctggtgaagaacaatgataaaatgtt |
319 |
Q |
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| T |
49133333 |
cgtcacacatcaatgatgaaaattgttcaccaactttggatcaagtaaagtaatggatagacacacagctaaatctggtgaagaacaatgataaaatgtt |
49133234 |
T |
|
| Q |
320 |
acagaacatgttctatttcttcgacaggataacatattcttataaatcaagcaattcgaccatcaacattctcaggcatgcctcttccttcatgatgacc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
49133233 |
acagaacatgttctatttcttcgacaggataacatattcttataaatcaagcaattcgaccatcaatattctcaggcatgccttttccttcatgatgacc |
49133134 |
T |
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| Q |
420 |
accatcnnnnnnnnnnnnnnnnnnaagttccaatcttagctaattcctcctcatgctttccattggcttttggtgagaggtggagtgagtgatttctctc |
519 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49133133 |
accatc------ttttttttttttaagttccaatcttagctaattcctcctcatgctttccattggcttttggtgagaggtggagtgagtgatttctctc |
49133040 |
T |
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| Q |
520 |
gtcatccaagtggtgttcatgtttgttacaatgacggcggcggtgatggtgatgatgtcca |
580 |
Q |
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| T |
49133039 |
gtcatccaagtggtgttcatgtttgttacaatgacggcggcggtgatggtggtgatgtcca |
49132979 |
T |
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