View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9175_low_2 (Length: 489)
Name: NF9175_low_2
Description: NF9175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9175_low_2 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0671 (1 HSPs) |
| | |
|
| [»] scaffold0359 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0585 (1 HSPs) |
| | |
|
| [»] scaffold0146 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0075 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 34455771 - 34456147
Alignment:
| Q |
14 |
cacagacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaa |
113 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34455771 |
cacaaacttatcattttctacgattagaaagtgtggcgtccctaaaccctccattccatttcttgtttgaatccacaaatcagcctaaacacctattcaa |
34455870 |
T |
|
| Q |
114 |
acccaaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttccttttgcacatcatttcattcgcaatatttcca |
213 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
34455871 |
atccaaattatcgttttcaactcaaacaattgtcaaaaattaatcccaatatataattttcatgttccttttgcacatcatttcattcacaatattttca |
34455970 |
T |
|
| Q |
214 |
gtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
34455971 |
gtctatttcttatgttttgtgcctatatttaatctttcagcaagcaactttttaccaattcataattaaaagtcaaatatgaacaattttcacaaaacag |
34456070 |
T |
|
| Q |
314 |
tgttcatcaatgtatctaaagcatttttatttgggcttcatgagctgttgtagcttaaaaagcagtcattgatataa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
34456071 |
tgttcatcaatgtatctaaagcatttttatttgggcttcatgagctgttgcagcttaaaaagcagttattgatataa |
34456147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 11475679 - 11475983
Alignment:
| Q |
18 |
gacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaaccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||| || |
|
|
| T |
11475679 |
gacttatcattttctaggattagaaagtgtggcgtctctaaactctccattccatttcttgtctgaaaccacaaatcagcctaaacaccaattcaaaacc |
11475778 |
T |
|
| Q |
118 |
aaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagtc |
216 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
11475779 |
aaattctcattttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttctttttggcacaccctttcattaacaatatttttagtt |
11475876 |
T |
|
| Q |
217 |
tatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtgt |
316 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11475877 |
catttcttaagttttgtgcctttaattaatctttcagcaatcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgt |
11475975 |
T |
|
| Q |
317 |
tcatcaat |
324 |
Q |
| |
|
|| ||||| |
|
|
| T |
11475976 |
tcgtcaat |
11475983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 34457255 - 34457343
Alignment:
| Q |
386 |
tataacaagttccttgtgaacttatgagagactttgtcaattgtactatgttgttgacaagagagatagagtttgaaaagggtgcagaa |
474 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34457255 |
tataacaaattccttttgaacttatgagagactttgtcaattgtactatgttgttgacaagagagatagagtttgaaaagggtgcagaa |
34457343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 9167300 - 9167339
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
9167300 |
agacttatcactttcttggattagaaagtgtggcgtccct |
9167339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 15017679 - 15017640
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15017679 |
agacttatcactttcttggattagaaagtgtggcgtccct |
15017640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 15019319 - 15019280
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15019319 |
agacttatcactttcttggattagaaagtgtggcgtccct |
15019280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 17266734 - 17266695
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
17266734 |
agacttatcactttcttggattagaaagtgtggcgtccct |
17266695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 39488186 - 39488147
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
39488186 |
agacttatcactttcttggattagaaagtgtggcgtccct |
39488147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 33758009 - 33757706
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
33758009 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
33757910 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
|||||| | |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
33757909 |
caaattataattttcaactcaaaccattgtc-aaaattaatcccaatacataattttcgt-ttccttttggcacaccctttcattaacaatatttttagt |
33757812 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33757811 |
tcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtg |
33757713 |
T |
|
| Q |
316 |
ttcatca |
322 |
Q |
| |
|
||||||| |
|
|
| T |
33757712 |
ttcatca |
33757706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 13184588 - 13184280
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattc--aaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| |||| ||| |
|
|
| T |
13184588 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaa |
13184489 |
T |
|
| Q |
115 |
cccaaattctc-gttttcaact-caaacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttc |
211 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| |
|
|
| T |
13184488 |
accaaattctcatttttcaactccaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatatttt |
13184391 |
T |
|
| Q |
212 |
cagtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaat |
311 |
Q |
| |
|
||| ||||||| |||||||||| | || |||| |||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
13184390 |
tagttcatttcttgtgttttgtgcttttaattaaactttcagcaagcaac-ttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaat |
13184292 |
T |
|
| Q |
312 |
agtgttcatcaa |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13184291 |
agtgttcatcaa |
13184280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 13179930 - 13179623
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattc--aaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| |||| ||| |
|
|
| T |
13179930 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaa |
13179831 |
T |
|
| Q |
115 |
cccaaattctc-gttttcaact-caaacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttc |
211 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| |
|
|
| T |
13179830 |
accaaattctcatttttcaactccaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatatttt |
13179733 |
T |
|
| Q |
212 |
cagtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaat |
311 |
Q |
| |
|
||| ||||||| |||||||||| | || |||| |||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
13179732 |
tagttcatttcttgtgttttgtgcttttaattaaactttcagcaagcaac-ttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaat |
13179634 |
T |
|
| Q |
312 |
agtgttcatca |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
13179633 |
agtgttcatca |
13179623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 5553587 - 5553626
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
5553587 |
agacttatcactttcttggattagaaagtgtggcgtccct |
5553626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 22271249 - 22271285
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtc |
53 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
22271249 |
agacttatcactttctgggattagaaagtgtggcgtc |
22271285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 288998 - 289302
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
288998 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
289097 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
289098 |
caaattctcattttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttctttttggcacaccctttcattaacaatatttttagt |
289195 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| ||||||| |||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
289196 |
tcatttcttgtgttttgagcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtg |
289294 |
T |
|
| Q |
316 |
ttcatcaa |
323 |
Q |
| |
|
|||||||| |
|
|
| T |
289295 |
ttcatcaa |
289302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 33819 - 33515
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
33819 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactcttcattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
33720 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||| ||||| | ||||||| ||||| || ||| |
|
|
| T |
33719 |
caaattctcattttcaactcaaatcattgtcaaaaa-taatcccaatgcataattttcgt-ttccttttggcacaccctttcattaacaataattttagt |
33622 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33621 |
tcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtg |
33523 |
T |
|
| Q |
316 |
ttcatcaa |
323 |
Q |
| |
|
|||||||| |
|
|
| T |
33522 |
ttcatcaa |
33515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 16417595 - 16417292
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
16417595 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgattgaaaccacaaatcagcctaaacaccaattcaaaac |
16417496 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||| ||| |||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
16417495 |
caaattctcattttcaactcaaatcattgtc-aaaattaatctcaatacataattttcgt-ttctttttggcacaccctttcattaacaatatttttagt |
16417398 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| ||||||| |||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16417397 |
tcatttcttgtgttttgcgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcataaaatagtg |
16417299 |
T |
|
| Q |
316 |
ttcatca |
322 |
Q |
| |
|
||||||| |
|
|
| T |
16417298 |
ttcatca |
16417292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 18774344 - 18774039
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||| | |
|
|
| T |
18774344 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaac |
18774245 |
T |
|
| Q |
117 |
caaattctc-gttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttccag |
214 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| || |
|
|
| T |
18774244 |
caaattctcatttttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatatttttag |
18774147 |
T |
|
| Q |
215 |
tctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagt |
314 |
Q |
| |
|
| ||||||| |||||||||||| || |||||||||| |||| ||| |||||| |||| |||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
18774146 |
ttcatttcttgtgttttgtgcctttaattaatctttctgcaagcaa-tttttatcaattcataattaaaagtcaaatatgatcaattttcacaaaatagt |
18774048 |
T |
|
| Q |
315 |
gttcatcaa |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
18774047 |
gttcatcaa |
18774039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 323 - 474
Target Start/End: Complemental strand, 39872888 - 39872737
Alignment:
| Q |
323 |
atgtatctaaagcatttttatttgggcttcatgagctgttgtagcttaaaaagcagtcattgatataacaagttccttgtgaacttatgagagactttgt |
422 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39872888 |
atgtatcctaagcatttttatttgggcttcatgagctgttgtagcttaaaaagcagtcattgatataacaagttccttgtgaacttatgagagactttgt |
39872789 |
T |
|
| Q |
423 |
caattgtactatgttgttgacaagagagatagagtttgaaaagggtgcagaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39872788 |
caattgtactatgttgttgacaagagagatagagtttgaaaagggtgcagaa |
39872737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 45 - 322
Target Start/End: Complemental strand, 17459868 - 17459593
Alignment:
| Q |
45 |
tgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacccaaattctcgttttcaactcaaacaatt |
144 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
17459868 |
tgtggcgtccctaaactctccattctatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttcaactcaaatcatt |
17459769 |
T |
|
| Q |
145 |
gtcaaaaattaatcccaatacataattttcgtgttccttttg-cacatcatttcattcgcaatatttccagtctatttcttatgttttgtgcctatattt |
243 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| |||| | ||||||| ||||| || || ||||||||||||||| | || || || |
|
|
| T |
17459768 |
gtcaaaa-ttaatcccaatacataattttcgt-ttccttttggcacaccctttcattaacaataattttagatcatttcttatgttttgagactttaatt |
17459671 |
T |
|
| Q |
244 |
aatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtgttcatca |
322 |
Q |
| |
|
||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17459670 |
aatctttcagcaagcaactttt-atcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
17459593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 18446241 - 18446280
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
18446241 |
agacttatcactttcttggattagaaagtgtggcgtccct |
18446280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 20730989 - 20731028
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20730989 |
agacttatcactttcttggattagaaagtgtggcgtccct |
20731028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 17462405 - 17462373
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtgg |
49 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
17462405 |
agacttataattttctaggattagaaagtgtgg |
17462373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 16157062 - 16157365
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
16157062 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
16157161 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| | ||| |||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
16157162 |
caaattctcattttcaactcaaatcattgtc-aaaattaatcccaatacataattttcat-ttctttttggcacaccctttcattaacaatatttttagt |
16157259 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16157260 |
tcatttctagtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtg |
16157358 |
T |
|
| Q |
316 |
ttcatca |
322 |
Q |
| |
|
||||||| |
|
|
| T |
16157359 |
ttcatca |
16157365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 21368684 - 21368381
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
21368684 |
agacttatcattttctaggattagaaagtgtggcatccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
21368585 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
21368584 |
taaattctaattttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttccttttggcacaccctttcattaacaatatttttagt |
21368487 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||| | |||||||||||| || |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21368486 |
tcatttcctgtgttttgtgcctttaattaatctttcagcaaacaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtg |
21368388 |
T |
|
| Q |
316 |
ttcatca |
322 |
Q |
| |
|
||||||| |
|
|
| T |
21368387 |
ttcatca |
21368381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 22707725 - 22707452
Alignment:
| Q |
20 |
cttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacccaa |
119 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| | || ||| ||||||||||||||| |||||||||| |||||||||| ||||||| |||| |
|
|
| T |
22707725 |
cttatcagtttctaggattagaaagtgaggcgtccctaaactttctattgcatttcttgtttgaaaccacaaatcaacctaaacaccaattcaaaaccaa |
22707626 |
T |
|
| Q |
120 |
attctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagtcta |
218 |
Q |
| |
|
|||||| || | ||||| ||| || |||||||||||||||||||||||||| | |||||||| |||||||||| | |||||||| || || | |
|
|
| T |
22707625 |
attctcatt----attcaaatcattatc-aaaattaatcccaatacataattttc-ttttccttttggcacatcatt---ataacaatattttcattcca |
22707535 |
T |
|
| Q |
219 |
tttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaatttt |
303 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| | ||| |||| ||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
22707534 |
tttcttgtgttttgtgcctata-ataatctttaatcaagcaac-ttttatcaattcataattaaaagtcaaatataaacaatttt |
22707452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 9595473 - 9595434
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
9595473 |
agacttatcactttcttggattagaaagtgtggcgtccct |
9595434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 9646436 - 9646397
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
9646436 |
agacttatcactttcttggattagaaagtgtggcgtccct |
9646397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 37260443 - 37260746
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
37260443 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccaattcttgtttgaaaccacgaatcagcctaaacaccaattcaaaat |
37260542 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
37260543 |
caaattctcattttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttctttttggcacaccctttcattgacaatatttttagt |
37260640 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37260641 |
tcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacaaaatagtg |
37260739 |
T |
|
| Q |
316 |
ttcatca |
322 |
Q |
| |
|
||||||| |
|
|
| T |
37260740 |
ttcatca |
37260746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 6473889 - 6473928
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6473889 |
agacttatcactttcttggattagaaagtgtggcgtccct |
6473928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 22062181 - 22062142
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22062181 |
agacttatcactttcttggattagaaagtgtggcgtccct |
22062142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 20190468 - 20190431
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtcc |
54 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
20190468 |
agacttatcagtttcttggattagaaagtgtggcgtcc |
20190431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 2160 - 2463
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
2160 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctgcattccaattcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
2259 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||| ||| |||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
2260 |
caaattctcattttcaactcaaatcattgtc-aaaattaatcccaatacatgattttcgt-ttctttttggcacaccttttcattaacaatatttttagt |
2357 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2358 |
tcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttctcaaaatagtg |
2456 |
T |
|
| Q |
316 |
ttcatca |
322 |
Q |
| |
|
||||||| |
|
|
| T |
2457 |
ttcatca |
2463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 8807 - 8502
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||| | |
|
|
| T |
8807 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacatatcagcctaaacaccaattcaaaac |
8708 |
T |
|
| Q |
117 |
caaattctc-gttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttccag |
214 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| || |
|
|
| T |
8707 |
caaattctcatttttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatatttttag |
8610 |
T |
|
| Q |
215 |
tctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagt |
314 |
Q |
| |
|
| ||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8609 |
ttcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcataattaaaagtcaaatatgaacaattttcacgaaatagt |
8511 |
T |
|
| Q |
315 |
gttcatcaa |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
8510 |
gttcatcaa |
8502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 7e-84; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 21299437 - 21299132
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||| | |
|
|
| T |
21299437 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaac |
21299338 |
T |
|
| Q |
117 |
caaattctc--gttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttcca |
213 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| | |
|
|
| T |
21299337 |
caaattctcattttttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatattttta |
21299240 |
T |
|
| Q |
214 |
gtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatag |
313 |
Q |
| |
|
|| ||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21299239 |
gttcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatag |
21299141 |
T |
|
| Q |
314 |
tgttcatca |
322 |
Q |
| |
|
||||||||| |
|
|
| T |
21299140 |
tgttcatca |
21299132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 91 - 305
Target Start/End: Original strand, 9344211 - 9344420
Alignment:
| Q |
91 |
aatcagcctaaacacctattcaaacccaaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttccttttgcaca |
190 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||||||| || ||||||| | ||||| |||||||||||||||| ||| ||| ||||| |
|
|
| T |
9344211 |
aatcagccaaaacaccaattcaaaaccaaattctcgttttcaactcaaatcatcgtcaaaa-tcaatcctaatacataattttcgt-ttcttttggcaca |
9344308 |
T |
|
| Q |
191 |
tcatttcattcgcaatatttccagtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaa |
290 |
Q |
| |
|
||||| |||| |||||| ||| |||| || ||||||||||||||| ||||| ||||||||| |||||||| | |||| ||||||||||||||||| |
|
|
| T |
9344309 |
tcatt-cattaa-aatattatttgtccatttattttgttttgtgcctataattaatatttcagcaagcaactttt-atcaattcataattaaaagtcaaa |
9344405 |
T |
|
| Q |
291 |
tatgaacaattttca |
305 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9344406 |
tatgaacaattttca |
9344420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 12639529 - 12639586
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccattt |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
12639529 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccattt |
12639586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 18553452 - 18553491
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
18553452 |
agacttatcactttcttggattagaaagtgtggcgtccct |
18553491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 18781868 - 18781907
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
18781868 |
agacttatcactttcttggattagaaagtgtggcgtccct |
18781907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 20417589 - 20417550
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20417589 |
agacttatcactttcttggattagaaagtgtggcgtccct |
20417550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 20419675 - 20419636
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20419675 |
agacttatcactttcttggattagaaagtgtggcgtccct |
20419636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 30518321 - 30518282
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
30518321 |
agacttatcactttcttggattagaaagtgtggcgtccct |
30518282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 22821336 - 22821032
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
22821336 |
agacttatcattttctaagattagaaagtgtggcgttcctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaac |
22821237 |
T |
|
| Q |
117 |
caaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcctttt-gcacatcatttcattcgcaatatttccagt |
215 |
Q |
| |
|
||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||| |||||||| ||||| | ||||||| |||||||| ||| |
|
|
| T |
22821236 |
caaattctcattttcaactcaattcattg-ccaaaattaatcccaatacataattttcgt-ttccttttggcacaccctttcattaacaatatttttagt |
22821139 |
T |
|
| Q |
216 |
ctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtg |
315 |
Q |
| |
|
||||||| |||||||| ||| || ||||||||||||||| |||| ||||| |||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
22821138 |
tcatttcttgtgttttgtacctttaattaatctttcagcaagcaac-ttttatcaattcataattataagtcaaatatgaacaattttcacaaaatagtg |
22821040 |
T |
|
| Q |
316 |
ttcatcaa |
323 |
Q |
| |
|
|| ||||| |
|
|
| T |
22821039 |
tttatcaa |
22821032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 244477 - 244438
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
244477 |
agacttatcactttcttggattagaaagtgtggcgtccct |
244438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 29950232 - 29950271
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
29950232 |
agacttatcactttcttggattagaaagtgtggcgtccct |
29950271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 29951870 - 29951909
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
29951870 |
agacttatcactttcttggattagaaagtgtggcgtccct |
29951909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 44794780 - 44795085
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| | ||||||||||||||| ||||||| | |
|
|
| T |
44794780 |
agacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccatagatcagcctaaacaccaattcaaaac |
44794879 |
T |
|
| Q |
117 |
caaattctc--gttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttcca |
213 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| | |
|
|
| T |
44794880 |
caaattctcattttttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatattttta |
44794977 |
T |
|
| Q |
214 |
gtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatag |
313 |
Q |
| |
|
|| ||||||| |||||||||||| || ||||||||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44794978 |
gttcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatag |
44795076 |
T |
|
| Q |
314 |
tgttcatca |
322 |
Q |
| |
|
||||||||| |
|
|
| T |
44795077 |
tgttcatca |
44795085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 73 - 323
Target Start/End: Complemental strand, 21465252 - 21465004
Alignment:
| Q |
73 |
ttcttgtttgaatccacaaatcagcctaaacacctattcaaacccaaattctcgttttcaactcaaacaattgtcaaaaattaatcccaatacataattt |
172 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
21465252 |
ttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaatcaaattctcattttcaactcaaatcattgtc-aaaattaatcccaatacataattt |
21465154 |
T |
|
| Q |
173 |
tcgtgttcctttt-gcacatcatttcattcgcaatatttccagtctatttcttatgttttgtgcctatatttaatctttcagcaaacaactttttaccaa |
271 |
Q |
| |
|
|||| ||| |||| ||||| | ||||||| |||||||| ||| ||||||| |||||||||||| || ||||||||||||||| |||| ||||| ||| |
|
|
| T |
21465153 |
tcgt-ttctttttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgcctttaattaatctttcagcaagcaac-ttttatcaa |
21465056 |
T |
|
| Q |
272 |
tccataattaaaagtcaaatatgaacaattttcataaaatagtgttcatcaa |
323 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21465055 |
ttcataattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcaa |
21465004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 127 - 323
Target Start/End: Complemental strand, 44794683 - 44794489
Alignment:
| Q |
127 |
ttttcaactcaaacaattgtcaaaaattaatcccaatacataattttcgtgttccttttg-cacatcatttcattcgcaatatttccagtctatttctta |
225 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| ||| | ||| |||| | ||||||| |||||||| ||| ||||||| |
|
|
| T |
44794683 |
ttttcaactcaaatcattgtcaaaa-ttaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatatttttagttcatttcttg |
44794586 |
T |
|
| Q |
226 |
tgttttgtgcctatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtgttcatcaa |
323 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||| | |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44794585 |
tgttttgtgcctttaattaatctttcagcaagcaactttt-atcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatcaa |
44794489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 6050259 - 6050220
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6050259 |
agacttatcactttcttggattagaaagtgtggcgtccct |
6050220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 15409914 - 15409953
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15409914 |
agacttatcactttcttggattagaaagtgtggcgtccct |
15409953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 42 - 322
Target Start/End: Original strand, 127083 - 127365
Alignment:
| Q |
42 |
aagtgtggcgtccctaaattctcaattccatttcttgtttgaatccacaaatcagcctaaacacctattc--aaacccaaattctc-gttttcaact-ca |
137 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| |||| ||| |||||||||| ||||||||| || |
|
|
| T |
127083 |
aagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaaaccaaattctcatttttcaactcca |
127182 |
T |
|
| Q |
138 |
aacaattgtcaaaaattaatcccaatacataattttcgtgttcct-tttgcacatcatttcattcgcaatatttccagtctatttcttatgttttgtgcc |
236 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||| ||| | || ||||| | ||||||| |||||||| ||| ||||||| |||||||||| |
|
|
| T |
127183 |
aatcattgtc-aaaattaatcccaatacataattttcgt-ttcttgttggcacaccctttcattaacaatatttttagttcatttcttgtgttttgtgct |
127280 |
T |
|
| Q |
237 |
tatatttaatctttcagcaaacaactttttaccaatccataattaaaagtcaaatatgaacaattttcataaaatagtgttcatca |
322 |
Q |
| |
|
| || |||| |||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
127281 |
tttaattaaactttcagcaagcaac-ttttatcaattcatgattaaaagtcaaatatgaacaattttcacaaaatagtgttcatca |
127365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 54886 - 54926
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtcccta |
57 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
54886 |
agacttatcactttcttggattagaaagtgtggcgtcccta |
54926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0585
Description:
Target: scaffold0585; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 909 - 870
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
909 |
agacttatcactttcttggattagaaagtgtggcgtccct |
870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 6730 - 6769
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6730 |
agacttatcactttcttggattagaaagtgtggcgtccct |
6769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 22651 - 22612
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22651 |
agacttatcactttcttggattagaaagtgtggcgtccct |
22612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 33332 - 33371
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
33332 |
agacttatcaatttcttggattagaaagtgtggcgtccct |
33371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 136872 - 136911
Alignment:
| Q |
17 |
agacttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
136872 |
agacttatcactttcttggattagaaagtgtggcgtccct |
136911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 25795 - 25758
Alignment:
| Q |
19 |
acttatcattttctaggattagaaagtgtggcgtccct |
56 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
25795 |
acttatcactttcttggattagaaagtgtggcgtccct |
25758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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