View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9175_low_3 (Length: 307)
Name: NF9175_low_3
Description: NF9175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9175_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 24180035 - 24180326
Alignment:
| Q |
1 |
ctttggaattatatattgtcttgaatataattgcataatttcatatgccaaaggatgagtaatttgcttctgaattggaatacgtgttagaaatttaaaa |
100 |
Q |
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| T |
24180035 |
ctttggaattatacattgtcttgaatttaattgcataatttgatatgccaaaggatgattaatttgcttatgaattggaatacgtgttagaaatttaaaa |
24180134 |
T |
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| Q |
101 |
taggtgttgctactacccaacttgtgcacaatagttaataacttggttgtgtggtagaggtagatgatgacgattttggctagaagatttttggatgagg |
200 |
Q |
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| T |
24180135 |
taggtgttgctactacccaacttgtgcacaatagttaataacttggttgtggggtagaggtagatgatgacgattttggctagaagatttttggacgagg |
24180234 |
T |
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| Q |
201 |
ttggttggg---atgaatcctctaacattcaaatcaagaagaatttgattacaagaacagttggagatgataatatggagccatgacgaagg |
289 |
Q |
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| T |
24180235 |
ttggttgggaatatgaatcctctaacattcaaatcaagaagaatttgattacaagaacagttggagatgataatatggagccatgacgaagg |
24180326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 24190082 - 24190196
Alignment:
| Q |
168 |
tgacgattttggctagaagatttttggatgaggtt-----ggttggga---tgaatcctctaacattcaaatcaagaagaatttgattacaagaacagtt |
259 |
Q |
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| T |
24190082 |
tgaccattttggctagaagacttttggacgaggttaggttggttgggaaggtgaatcctctaacattcaaatcaagaagaatttgattacaagaacagtt |
24190181 |
T |
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| Q |
260 |
ggagatgataatatg |
274 |
Q |
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| T |
24190182 |
ggagatgatagtatg |
24190196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 24119965 - 24120071
Alignment:
| Q |
105 |
tgttgctactacccaacttgtgcacaa-tagttaataacttggttgtgtggtagaggtagatgatgacgattttggctagaagatttttggatgaggttg |
203 |
Q |
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||||| |||||||| |||||||||||| |||| ||| |||||||| |||| |||||||| ||||| | ||||||| | |||||||||| | |||||| |
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| T |
24119965 |
tgttgttactaccccacttgtgcacaaatagtcaattacttggttttgtgtcagaggtaggtgatgccaattttggtttaaagatttttgaacaaggttg |
24120064 |
T |
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| Q |
204 |
gttggga |
210 |
Q |
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||||||| |
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| T |
24120065 |
gttggga |
24120071 |
T |
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