View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9176_low_12 (Length: 237)
Name: NF9176_low_12
Description: NF9176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9176_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 34264465 - 34264246
Alignment:
| Q |
8 |
ccggccaggcccaataatattttttctaattgtacactgcttttggttcagatttcgaaagttactttaacaaagttacacacagtcaaggatccaccaa |
107 |
Q |
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| T |
34264465 |
ccggccaggcccaataatatttattctaattggaccctgcttttggttcagattttgaaagttactttaacaaagtagcacacagtcaaggatccaccaa |
34264366 |
T |
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| Q |
108 |
gcagtgttttgtttgtttgtatctttagagcta----gtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggact |
203 |
Q |
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| T |
34264365 |
gcagtgttttgtttgtttgtatctttggagctagtacgtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggact |
34264266 |
T |
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| Q |
204 |
aaatttcttcttgctttaac |
223 |
Q |
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||||||| |||||||||||| |
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| T |
34264265 |
aaatttcatcttgctttaac |
34264246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 34403990 - 34404113
Alignment:
| Q |
95 |
aaggatccaccaagcagtgttttgtttgtttgtatctttagagctagtacactctttatttataagctagctcatctctcaatatcttaaaagtggccga |
194 |
Q |
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| T |
34403990 |
aaggacccaccaagaa-tgttttgtttgtttgtatctttggag----tacactctttatttataagctagctcatctctcaatgtcttaaaagtggccga |
34404084 |
T |
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| Q |
195 |
tgtgggactaaatttcttcttgctttaac |
223 |
Q |
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| T |
34404085 |
tgtgggactaaatttcttcatgctttaac |
34404113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 34403892 - 34403958
Alignment:
| Q |
11 |
gccaggcccaataatatttt-ttctaattgtacactgcttttggttcagatttcgaaagttacttta |
76 |
Q |
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| T |
34403892 |
gccagacccaataatattttgttttatttggacactgctttttgttcagattttgaacgttacttta |
34403958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 8340039 - 8340153
Alignment:
| Q |
110 |
agtgttttgtttgtttgtatctttagagctagtacactctttatttataagctagctcatctctcaatatcttaaaagtgg--ccgatgtgggactaaat |
207 |
Q |
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| T |
8340039 |
agtgttttgtttgtttgtatctttggagctagtacactctttatttataacctaactcatctctcaatgtcttaagagtggccccgatgtaggactaaat |
8340138 |
T |
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| Q |
208 |
ttcttcttgctttaa |
222 |
Q |
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| T |
8340139 |
ttgttcttgctttaa |
8340153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 32161610 - 32161489
Alignment:
| Q |
101 |
ccaccaagcagtgttttgtttgtttgtatctttagagctagtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtggg |
200 |
Q |
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|||||||||| || ||||||| |||||||||| ||||| ||| ||||||||||||||| ||| |||| |||||||| | |||||| | | |||||||| |
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| T |
32161610 |
ccaccaagcaatgctttgtttacttgtatcttt-gagcttgtagactctttatttataacctaactcacctctcaatgtattaaaactagttgatgtggg |
32161512 |
T |
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| Q |
201 |
actaaatttcttcttgctttaac |
223 |
Q |
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||||| ||| |||||||||||| |
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| T |
32161511 |
actaagtttgatcttgctttaac |
32161489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 31529334 - 31529460
Alignment:
| Q |
95 |
aaggatccaccaagcagtgttttgtttgtttgtatctttagagctagtacactctttatttataagctagctcatctctcaatatcttaaaagtggccga |
194 |
Q |
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|||||||||||||||| || ||||||| |||||||||| ||||| ||| ||||||||||||||| |||| ||| |||||||| | |||||| | ||||| |
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| T |
31529334 |
aaggatccaccaagcaatgctttgtttacttgtatcttt-gagcttgtagactctttatttataacctagttcacctctcaatgtattaaaactagccga |
31529432 |
T |
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| Q |
195 |
tgtgggactaaatttcttcttgctttaa |
222 |
Q |
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||||||||||| ||| ||||||||||| |
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| T |
31529433 |
tgtgggactaagtttgatcttgctttaa |
31529460 |
T |
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