View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9176_low_2 (Length: 880)
Name: NF9176_low_2
Description: NF9176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9176_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 736; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 15 - 864
Target Start/End: Original strand, 18256208 - 18257045
Alignment:
| Q |
15 |
cagagacaaacacaaacaaataaattaagaaaacccagtaacatgaagattcctcactctttcatatgaataacatcatagtttaaccacgacctccaag |
114 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18256208 |
cagaaacaaacacaaacaaataaa---agaaaagccagtaacatgaagattcctcactctttcatatgaataacatcataatttaaccacgacctccaag |
18256304 |
T |
|
| Q |
115 |
aacacccttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatc |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18256305 |
aatacccttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatc |
18256404 |
T |
|
| Q |
215 |
tgtaaacgaggattagcactactaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtggaaaaatcataa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18256405 |
tgtaaacgaggattagcactactaaagctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtggaaaaatcataa |
18256504 |
T |
|
| Q |
315 |
catcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcacc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18256505 |
catcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcacc |
18256604 |
T |
|
| Q |
415 |
ggggtgtgtgtgaagtggaataacaccaccgacggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgca |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18256605 |
ggggtgtgtgtgaagtggaataacaccacctacggctatatctaaacgtgcaatggatattccaagaccgtttacaccgggaaattgtgcgtctattgca |
18256704 |
T |
|
| Q |
515 |
gtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaag |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18256705 |
gtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaag |
18256804 |
T |
|
| Q |
615 |
aatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagattgt |
714 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18256805 |
aatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagt |
18256904 |
T |
|
| Q |
715 |
tagaatcatcttcatgtttttgttgttattgttgataatgttatattttgtgtgtatttgtggtcaaattggttctattatatatagagtgtggaatagt |
814 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18256905 |
tagaatcatcttca---------tgttattgttgataatgttatattgtgtgtgtatttgtggtcaaattggttctattatatatagagagtggaatagt |
18256995 |
T |
|
| Q |
815 |
ggaaatatatgtttttgatattccttttgaataatttgaattgatcattc |
864 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
18256996 |
ggaaatatatatttttaatattctttctgaataatttgaattgatcattc |
18257045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 41 - 863
Target Start/End: Complemental strand, 18253338 - 18252524
Alignment:
| Q |
41 |
aagaaaacccagtaa-catgaagattcctcactctttcatatgaataacatcatagtttaaccacgacctccaagaacacccttaagcttcttcactaca |
139 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
18253338 |
aagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatcatagtttaaccactacctccaagaacactcttaagcttcttcactaca |
18253239 |
T |
|
| Q |
140 |
gcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcactactaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18253238 |
gcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcactactaa |
18253139 |
T |
|
| Q |
240 |
agctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaag |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18253138 |
agctattaaaagtaagtgcattagaaccaccaacattaatttggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaag |
18253039 |
T |
|
| Q |
340 |
gtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataaca |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18253038 |
gtaaacaacattgtcagaggaaacaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataaca |
18252939 |
T |
|
| Q |
440 |
ccaccgacggctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgt |
539 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18252938 |
ccaccaacggctatatctaaacgagcaatggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgt |
18252839 |
T |
|
| Q |
540 |
ttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgc |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18252838 |
ttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgc |
18252739 |
T |
|
| Q |
640 |
attgtaatctgctacgcagaaatcgactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagattgttagaatcatcttcatgtttttgttg |
739 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
18252738 |
attgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagttagaatcatcttca---------tg |
18252648 |
T |
|
| Q |
740 |
ttattgttgataatgttatattttgtgtgtatttgtggtcaaattggttctattatatatagagtgtggaatagtggaaatatatgtttttgatattcct |
839 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
18252647 |
ttattgttgataatgttatattgtgtgtgtatttgtggtcaaattggttctattatatatagagagtggaatagtggaaatatatgttttttatattcct |
18252548 |
T |
|
| Q |
840 |
tttgaataatttgaattgatcatt |
863 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18252547 |
tttgaataatttgaattgatcatt |
18252524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 63 - 811
Target Start/End: Complemental strand, 18246210 - 18245475
Alignment:
| Q |
63 |
attcctcactctttcatatgaataacatcatagttt-aaccacgacctccaagaacacccttaagcttcttcactacagcaggatcaataaaagtagttg |
161 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18246210 |
attcctcattctttcat--gagtaacatcatagttttaaccactacctccaagaacacccttaagcttcttcactacagcagcatcaataaaagtagttg |
18246113 |
T |
|
| Q |
162 |
cagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcactactaaagctattaaaagtaagtgcatt |
261 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
18246112 |
cagtaatcaactccgttggaaaatcacttttaaacaaagcaaaatccaatatctgtaaaccagggttagcactactaaagctaacaaaagcaagtgcatt |
18246013 |
T |
|
| Q |
262 |
agaaccaccaacattaatttggaaatgcaacaatccttgtggaaaaatcataacatcacctttgtgaagtgttttaaggtaaacaacattgtcagaggaa |
361 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||| |||||||| |
|
|
| T |
18246012 |
agaaccaccactgttaatttggaaatgcaacaatccttgtggaaaaaccataacatcacctttgtaaagtgttttaatgtaaacagtgttggcagaggaa |
18245913 |
T |
|
| Q |
362 |
acaaaaccagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccgacggctatatctaaac |
461 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
18245912 |
acaaaaccagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaac |
18245813 |
T |
|
| Q |
462 |
gcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggc |
561 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||| | |||||| |||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| || |
|
|
| T |
18245812 |
gcgcaagggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagc |
18245713 |
T |
|
| Q |
562 |
taggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaa |
661 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
18245712 |
taggccgtggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaa |
18245613 |
T |
|
| Q |
662 |
tcgactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagattgttagaatcatcttcatgtttttgttgttattgttgataatgttatatt |
761 |
Q |
| |
|
|| ||||| |||||||||| ||||||||||||||||||||||||| |||| | || ||||||||||| | ||||||||| ||||| || |
|
|
| T |
18245612 |
tctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttca------------ttttgttgatagtgttaggtt |
18245525 |
T |
|
| Q |
762 |
ttgtgtgtatttgtggtcaaattggttctattatatatagagtgtggaat |
811 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
18245524 |
ttgtgtgtttttgtggtcaatttggttctactatatatagagagtggaat |
18245475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University