View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9176_low_5 (Length: 467)
Name: NF9176_low_5
Description: NF9176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9176_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 24 - 456
Target Start/End: Complemental strand, 9644351 - 9643919
Alignment:
| Q |
24 |
agataaaccagtagatacaaaagtcctatgtaaaagttagtccaaaatgcaagtggtcataacattattaacatatgcctacttgcaactcagaaatctg |
123 |
Q |
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| T |
9644351 |
agataaaccagtagatacaaaagtcccatgtaaaagttagtccaaaatgcaagtggtcataacattattaacatatgcctacttgcaactcagaaatctg |
9644252 |
T |
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| Q |
124 |
tcgcttataatcgcgaatgagattagcggtggctccatttgataagatgagctcctcaagttcatgaattgtttggctaagtttctcaacttccacaatc |
223 |
Q |
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| T |
9644251 |
tcgcttataatcgcgaatgagattagcggtggctccatttgataagatgagctcctcaagttcatgaattgtttggctaagtttctcaacttccacaatc |
9644152 |
T |
|
| Q |
224 |
ttttgacggtggcttttctccaagattttgttctcctcctgttcatgaaaagttgtataaattttgctgaaactgattgccgtttgatatagaaactata |
323 |
Q |
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| T |
9644151 |
ttttgacggtggcttttctccaagattttgttctcctcctgttcatgaaaagttgtataaattttgctgaaactgattgccgtttgatatagaaactata |
9644052 |
T |
|
| Q |
324 |
cacggaaatggaaacataaaaagatatatgcctggcagatctcaatctgtctcttcaagtcaaagttttcattctgaacttcttcgactatcaaagctct |
423 |
Q |
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| T |
9644051 |
cacggaaatggaaacataaaaagatatatgcctggcagatctcgatctgtctcttcaagtcaaagttttcattctgaacttcttcgactatcaaagctct |
9643952 |
T |
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| Q |
424 |
ctctaatgcacttcttaaaatcctctctgcttc |
456 |
Q |
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| T |
9643951 |
ctctaatgcacttcttaaaatcctctctgcttc |
9643919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 266
Target Start/End: Complemental strand, 56007107 - 56006944
Alignment:
| Q |
103 |
tacttgcaactcagaaatctgtcgcttataatcgcgaatgagattagcggtggctccatttgataagatgagctcctcaagttcatgaattgtttggcta |
202 |
Q |
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||||||||| ||||||| ||||| | |||||||||| | ||||| || || ||||| | |||||||| ||||||||||| ||||| ||||||||| |
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| T |
56007107 |
tacttgcaattcagaaaactgtctttggtaatcgcgaacaacgttagctgtagcgccattagctaagatgacttcctcaagttcttgaatggtttggcta |
56007008 |
T |
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| Q |
203 |
agtttctcaacttccacaatcttttgacggtggcttttctccaagattttgttctcctcctgtt |
266 |
Q |
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|| || |||||||| | ||||||||| ||||| |||||| || |||||| |||||||||||| |
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| T |
56007007 |
agcttttcaacttcaagaatcttttggcggtgagatttctctaaaattttggtctcctcctgtt |
56006944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 453
Target Start/End: Complemental strand, 56006856 - 56006755
Alignment:
| Q |
352 |
tgcctggcagatctcaatctgtctcttcaagtcaaagttttcattctgaacttcttcgactatcaaagctctctctaatgcacttcttaaaatcctctct |
451 |
Q |
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||||||| |||| |||||||||||||| || ||||| |||| ||| ||||||||||| | ||| | ||| |||||| ||||||| |||||||||||| |
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| T |
56006856 |
tgcctggtagatatcaatctgtctctttaaatcaaaattttgattttgaacttcttcaattattagagccttctctagtgcactttgcaaaatcctctct |
56006757 |
T |
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| Q |
452 |
gc |
453 |
Q |
| |
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|| |
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| T |
56006756 |
gc |
56006755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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