View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9177_low_2 (Length: 390)

Name: NF9177_low_2
Description: NF9177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9177_low_2
NF9177_low_2
[»] chr1 (17 HSPs)
chr1 (1-390)||(27207960-27208368)
chr1 (121-390)||(27433040-27433331)
chr1 (121-390)||(27221293-27221557)
chr1 (121-390)||(27215331-27215595)
chr1 (184-268)||(27455327-27455411)
chr1 (297-390)||(27443477-27443570)
chr1 (121-212)||(27443284-27443375)
chr1 (23-97)||(27221595-27221669)
chr1 (17-97)||(27443166-27443248)
chr1 (198-263)||(20952786-20952851)
chr1 (293-364)||(27410236-27410307)
chr1 (23-90)||(27215653-27215721)
chr1 (20-97)||(27433378-27433453)
chr1 (293-364)||(27415750-27415821)
chr1 (142-187)||(27390259-27390304)
chr1 (142-187)||(27410494-27410539)
chr1 (344-390)||(27389254-27389300)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 27208368 - 27207960
Alignment:
Q  1 aataatttgtatatgtagaaggctatatatat--gtcaagaagaagagagaaacttcatcaatcactttcaaacagcaaactacaatcgaaagagaaaaa 98  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27208368 aataatttgtatatgtagaaggctatatatatatgtcaagaagaagagagaaacttcatcaatcactttcaaacagcaaactacaatcgaaagagaaaaa 27208269  T
Q  99 tactgcgaagagagaagtctatatatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtatatatatcagtact 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27208268 tactgcgaagagagaagtctatatatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtatatatatcagtact 27208169  T
Q  199 caactacattaattttccatatagttaatcgattaattcatttagcttagtttatttctct-----------------tcatttggtcttctaatatgaa 281  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||                 ||||||| ||||||||||||||    
T  27208168 caactacattaattttccatatagttaatccattaattcatttagcttagtttatttctcttcatgtggttaataaattcatttgctcttctaatatgaa 27208069  T
Q  282 cgtatttttcatttgtatgcagtggttggaggagctaagttgacattcacaaatagtagtaaatacactgtatggccaggaacaataactggagaccaaa 381  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||  |||||||||||||||||||||  |||||||||||||||    
T  27208068 cgtatttttcatttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaa 27207969  T
Q  382 aacctcagc 390  Q
    |||||||||    
T  27207968 aacctcagc 27207960  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 121 - 390
Target Start/End: Complemental strand, 27433331 - 27433040
Alignment:
Q  121 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggta-tatatatcagtactca----actacattaattttc 215  Q
    |||||||||||||||  || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  27433331 atatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttc 27433232  T
Q  216 catatagttaatcgattaattcatttagcttagtttatttctcttcatttggt-----------------cttctaatatgaacgtatttttcatttgta 298  Q
    ||||||||||||  |||||||||||||||||| |||||| |||||||| ||||                 ||||||||||||||||||||| ||||||||    
T  27433231 catatagttaataaattaattcatttagcttattttattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgta 27433132  T
Q  299 tgcagtggttggaggagctaagttgacattcacaaatagtagtaaatacactgtatggccaggaacaataactggagaccaaaaacctcagc 390  Q
    ||||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| |||||  |||||||||||||||| |||||||    
T  27433131 tgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaagcctcagc 27433040  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 121 - 390
Target Start/End: Complemental strand, 27221557 - 27221293
Alignment:
Q  121 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc 216  Q
    |||||||||||||   ||| ||| |||||| ||||| |||| ||||||||||||||||||||||     |||||||| |||  |||||||||||||||||    
T  27221557 atatccaaaatgacaagcacccgcgttgctctatgccttagttttgcattcctcttctatggtacgtacatatatcaatacataactacattaattttcc 27221458  T
Q  217 atatagttaatcgattaattcatttagcttagtttatttctcttcatttggtcttctaatatgaacgtatttttcatttgtat--gcagtggttggagga 314  Q
    ||||| ||||||    |||||| |||||| |||| ||||||||||||  | |       ||| ||  |  |||  ||||||||  |||||||||||||||    
T  27221457 atataattaatc----aattcacttagctaagttaatttctcttcatgcgct-------tattaaattcatttgtatttgtatatgcagtggttggagga 27221369  T
Q  315 gctaagttgacattcacaaatagtagtaaatacactgtatggccaggaacaataactggagaccaaaaacctcagc 390  Q
    |||||| |||| |||||||||||  || ||||||||||||||||||||||  |||| |||||||||||||||||||    
T  27221368 gctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagc 27221293  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 121 - 390
Target Start/End: Complemental strand, 27215595 - 27215331
Alignment:
Q  121 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc 216  Q
    |||||||||||||   ||| |||||||||| | ||| |||| ||||||||||||||||| ||||     |||||||| |||  |||||||||||||||||    
T  27215595 atatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaattttcc 27215496  T
Q  217 atatagttaatcgattaattcatttagcttagtttatttctcttcatttggtcttctaatatgaacgtatttttcatttgtat--gcagtggttggagga 314  Q
    ||||| ||||||    |||||| |||||| |||| ||||||||||||  | | | ||||  | |      |||  ||||||||  |||||||||||||||    
T  27215495 atataattaatc----aattcacttagctaagttaatttctcttcatgcgct-tactaaattca------tttgtatttgtatatgcagtggttggagga 27215407  T
Q  315 gctaagttgacattcacaaatagtagtaaatacactgtatggccaggaacaataactggagaccaaaaacctcagc 390  Q
    |||||| |||| |||||||||||  || ||||||||||||||||||||||  |||| |||||||||||||||||||    
T  27215406 gctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagc 27215331  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 27455411 - 27455327
Alignment:
Q  184 atatatatcagtactcaactacattaattttccatatagttaatcgattaattcatttagcttagtttatttctcttcatttggt 268  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||    
T  27455411 atatatatcaatacccaactacattaattttccatatagtaaatcaattaattcatttagcttagtttattgctcttcatgtggt 27455327  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 27443477 - 27443570
Alignment:
Q  297 tatgcagtggttggaggagctaagttgacattcacaaatagtagtaaatacactgtatggccaggaacaataactggagaccaaaaacctcagc 390  Q
    |||||||| ||||||||||||||| |||| |||||||||||  || ||||||||||||||||||||||  |||| |||||||||||||||||||    
T  27443477 tatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagc 27443570  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 27443284 - 27443375
Alignment:
Q  121 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtatatatatcagtactcaactacattaatt 212  Q
    |||||||||||||   |||  ||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27443284 atatccaaaatgacaagcactcgtgttgctctatgccttagttttgcattcctcttctatggtatatatatcactactcaactacattaatt 27443375  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 27221669 - 27221595
Alignment:
Q  23 ctatatatatgtcaagaagaagagagaaacttcatcaatcactttcaaacagcaaactacaatcgaaagagaaaa 97  Q
    |||||||||||||| |||| |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27221669 ctatatatatgtcacgaagcagagaacaacttcatcaatcacttacaaacagcaaactacaatcgaaagagaaaa 27221595  T

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Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 27443166 - 27443248
Alignment:
Q  17 agaaggctatatat--atgtcaagaagaagagagaaacttcatcaatcactttcaaacagcaaactacaatcgaaagagaaaa 97  Q
    ||||||||||||||  |||||| |||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27443166 agaaggctatatatttatgtcatgaagcagagaacaacttcatcaatcaccttcaaacagcaaactacaatcgaaagagaaaa 27443248  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 20952851 - 20952786
Alignment:
Q  198 tcaactacattaattttccatatagttaatcgattaattcatttagcttagtttatttctcttcat 263  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||    
T  20952851 tcaactacactaattttccatatagttaataaattaattcatttagcttagtttatccctcttcat 20952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 27410307 - 27410236
Alignment:
Q  293 tttgtatgcagtggttggaggagctaagttgacattcacaaatagtagtaaatacactgtatggccaggaac 364  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||  ||  ||| |||||||||||||||||    
T  27410307 tttgtatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaac 27410236  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 27215721 - 27215653
Alignment:
Q  23 ctatatatatgtcaagaagaagagagaaacttcatc-aatcactttcaaacagcaaactacaatcgaaa 90  Q
    |||||||||||| |||||| |||||| ||||||||| |||||| |||| ||| ||||||||||||||||    
T  27215721 ctatatatatgtaaagaagcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaa 27215653  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 27433453 - 27433378
Alignment:
Q  20 aggctatatatatgtcaagaagaagagagaaacttcatcaatcactttcaaacag-caaactacaatcgaaagagaaaa 97  Q
    |||||||||||||||||||||| |||||| || ||||||||||||   |||||||  |||||||||| |||||||||||    
T  27433453 aggctatatatatgtcaagaagcagagagcaatttcatcaatcac---caaacagaaaaactacaattgaaagagaaaa 27433378  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 27415750 - 27415821
Alignment:
Q  293 tttgtatgcagtggttggaggagctaagttgacattcacaaatagtagtaaatacactgtatggccaggaac 364  Q
    ||||| ||||| |||||||||||| ||| |||||||||| |||||  ||  |||||||||||||||||||||    
T  27415750 tttgtctgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac 27415821  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 27390304 - 27390259
Alignment:
Q  142 cgtgttgctttatgctttagctttgcattcctcttctatggtatat 187  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  27390304 cgtgttgctctctgccttagctttgcattcctcttctatggtatat 27390259  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 27410539 - 27410494
Alignment:
Q  142 cgtgttgctttatgctttagctttgcattcctcttctatggtatat 187  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  27410539 cgtgttgctctctgccttagctttgcattcctcttctatggtatat 27410494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 27389300 - 27389254
Alignment:
Q  344 atacactgtatggccaggaacaataactggagaccaaaaacctcagc 390  Q
    |||||| ||||||||||||||  |||| |||||||||||||||||||    
T  27389300 atacaccgtatggccaggaaccttaaccggagaccaaaaacctcagc 27389254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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