View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9177_low_3 (Length: 322)
Name: NF9177_low_3
Description: NF9177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9177_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 131283 - 130994
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131283 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgact |
131184 |
T |
|
| Q |
118 |
cgaaatgtgcagagcgctgaaaatcactataaatatccatatagatccaaaacttttgtagattgtataagtccaaatccttgactaaaacttcagtccc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
131183 |
cgaaatgtgcagagcgctgaaaatcactataaatatccacatagatccaaaacttttgtagattgtataagtccaaatccttgattaaaacttcagtccc |
131084 |
T |
|
| Q |
218 |
tctaacttttatctcaaagacctttagctgataagatatcttttttaactcattgattgcaatctcatttcctttccaaggaaaattgtc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
131083 |
tctaacttttatctcaaagacctttagctgataagatatcttttttaactcgttgattgcaacctcatttcctttccaaggaaaattgtc |
130994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 34553513 - 34553802
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgact |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
34553513 |
cttattgcaaggatttcacatttcttaatcaattgtgagaccatcaatatgctattaatagattgataatctatagcaccgacttgcaataaatttgact |
34553612 |
T |
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| Q |
118 |
cgaaatgtgcagagcgctgaaaatcactataaatatccatatagatccaaaacttttgtagattgtataagtccaaatccttgactaaaacttcagtccc |
217 |
Q |
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| T |
34553613 |
ccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaacttttgtaggttgtataagttcaagtccttgactgaaatttcagtccc |
34553712 |
T |
|
| Q |
218 |
tctaacttttatctcaaagacctttagctgataagatatcttttttaactcattgattgcaatctcatttcctttccaaggaaaattgtc |
307 |
Q |
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||| ||||| ||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| |||||| || ||||||||||||||| |
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| T |
34553713 |
tctgactttcatctcaacaacctttagctgatgagatatctttttcaactcattgatcgcaatttcatttttttcccaaggaaaattgtc |
34553802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 34290703 - 34290946
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgact |
117 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
34290703 |
cttattgcaaggatttcacatttcttaatcaattgtgagatcatcaatatgctattaatagattgataatcaatac-------ttgcaataaatttgact |
34290795 |
T |
|
| Q |
118 |
cgaaatgtgcagagcgctgaaaatcactataaatatccatatagatccaaaacttttgtagattgtataagtccaaatccttgactaaaacttcagtccc |
217 |
Q |
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| |||| ||||||| |||||||||||||||||| ||||| ||| |||||||||||||| | |||| || |||||||||||||||||| ||||| ||| |
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| T |
34290796 |
ccaaatatgcagagtgctgaaaatcactataaagatccacataaatccaaaacttttgcaagttgttgaaaaccaaatccttgactaaaatttcagcccc |
34290895 |
T |
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| Q |
218 |
tctaacttttatctcaaagacctttagctgataagatatcttttttaactc |
268 |
Q |
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|| |||||| ||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
34290896 |
tccaactttcatctcaacaacctttagctgatgagatatctttttcaactc |
34290946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 34565184 - 34565475
Alignment:
| Q |
18 |
cttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgact |
117 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||||| |||| | |
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| T |
34565184 |
cttattacgaggatttcacatttcttaatcaattgtgagatcatcaatatgctaccaatagattgatagcctataccactaacttgcaataaagttgagt |
34565283 |
T |
|
| Q |
118 |
cgaaatgtgcagagcgctgaaaatcactataaatatccatatagatccaaaacttttgtagattgtataagtccaaatccttgactaaaacttcagtccc |
217 |
Q |
| |
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| |||| | ||| || ||||||||| | || ||||| ||| | |||||||||||| | || | ||||||||||||||||||||| ||||| ||| |
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| T |
34565284 |
ccaaatataaagatcgttgaaaatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatccttgactaaactttcagcccc |
34565383 |
T |
|
| Q |
218 |
tctaacttttatctcaaagacctttagctgataagatatcttttttaactcattgattgcaatctcatttcctttccaaggaaaattgtcta |
309 |
Q |
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|||| ||||||||||| ||||||||||||| |||||| ||||| || || |||| |||| ||||||| |||||||||||||||||||| |
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| T |
34565384 |
cctaaattttatctcaacaacctttagctgatgagatatttttttcaattcgttgagcgcaacttcatttcttttccaaggaaaattgtcta |
34565475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 15894875 - 15895162
Alignment:
| Q |
19 |
ttattgcgaggatttcacatttcttaatcaattgtgagatcatcagtatgctattaatagattgatagtctatagcactaatttgcaataaatttgactc |
118 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||| |||||| ||||| |||||||||||||||||| |
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| T |
15894875 |
ttattgcaaggatttcacatttcttaatcacttgtgagatcatcaatatgctatttatatattgataacctatagaactaacttgcaataaatttgactc |
15894974 |
T |
|
| Q |
119 |
gaaatgtgcagagcgctgaaaatcactataaatatccatatagatccaaaacttttgtagattgtataagtccaaatccttgactaaaacttcagtccct |
218 |
Q |
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|||| || ||| | ||||||| | || ||||| ||| | ||||||||| |||| |||| ||| |||||||||||| ||||| |||||| ||| |
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| T |
15894975 |
caaatatgaagatctttgaaaattagagtatcgatccacataaacccaaaacttctgtaagttgttgaagaccaaatccttgagtaaaatttcagtacct |
15895074 |
T |
|
| Q |
219 |
ctaacttttatctcaaagacctttagctgataagatatcttttttaactcattgattgcaatctcatttcctttccaaggaaaattgt |
306 |
Q |
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|||| ||| ||||||| ||||||||||||| |||||||||||| | ||| ||||| |||| |||||| |||||||||||||||| |
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| T |
15895075 |
ctaaatttcatctcaacaacctttagctgatgagatatctttttcagctcgttgatcgcaacttcatttttattccaaggaaaattgt |
15895162 |
T |
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