View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9177_low_4 (Length: 304)
Name: NF9177_low_4
Description: NF9177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9177_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 55573746 - 55573883
Alignment:
| Q |
1 |
acaaggttccttattttgaagaaatgatattttgacatcaaatacgacatcttttggtttttatg----tgtattttttaaattcacgtaagttgtaaga |
96 |
Q |
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| T |
55573746 |
acaaggttccttattttgaagaaatgatattttgacatcaaatacgacatcttttggtttttatgtatgtgtattttttaaattcacgtaagttgtaaga |
55573845 |
T |
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| Q |
97 |
gataaaaagtaacaaagagataaagataaacatatacg |
134 |
Q |
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| T |
55573846 |
gataaaaagtaacaaagagataaagataaacatatacg |
55573883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 55573930 - 55574044
Alignment:
| Q |
181 |
aaagactcacaaccacttaccactttagtgggggaaaatttaataccaacttgatgtcaaatttctttacttttgtgtcatgtttttacggatgcaacat |
280 |
Q |
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| T |
55573930 |
aaagactcacaaccacttaccactttagtgggggaaaatttaataccaacttgatgtcaaatttctttacttttgtgtcatgtttttacggatgcaacat |
55574029 |
T |
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| Q |
281 |
gtttgccagtattat |
295 |
Q |
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| T |
55574030 |
gtttggcagtattat |
55574044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 20809076 - 20809151
Alignment:
| Q |
53 |
tttggtttttatgtgtattttttaaattcacgtaagttgtaagagataaaaagtaacaaagagataaagataaaca |
128 |
Q |
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| T |
20809076 |
tttggtttttgtgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 16560857 - 16560792
Alignment:
| Q |
66 |
tgtattttttaaattcacgtaagttgtaagagataaaaagtaacaaagagataaagataaacatat |
131 |
Q |
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| T |
16560857 |
tgtattttttaaactcatataagttgtatatgataaaaagtaaaagagagataaagataaatatat |
16560792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 6527458 - 6527418
Alignment:
| Q |
53 |
tttggtttttatgtgtattttttaaattcacgtaagttgta |
93 |
Q |
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| T |
6527458 |
tttggtttttatgtgtattttttaaatgcatgcaagttgta |
6527418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 10313896 - 10313839
Alignment:
| Q |
53 |
tttggtttttatgtgtattttttaaattcacgtaagttgtaagagataaaaagtaaca |
110 |
Q |
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|||| ||||| |||||| |||| ||||||| |||||||||| ||||||||||||||| |
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| T |
10313896 |
tttgatttttgtgtgtaattttgaaattcatgtaagttgtacaagataaaaagtaaca |
10313839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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