View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_high_3 (Length: 578)
Name: NF9178_high_3
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 271 - 562
Target Start/End: Original strand, 6119133 - 6119424
Alignment:
| Q |
271 |
aacagagagacgagtcttccgttgattatgaattacactcttctatttctccgacaagattaaattcagcagacaattcgaagacagatgaggtgtttct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6119133 |
aacagagagacgagtcttccgttgattatgaattacactcttctatttctccaacaagattaaattcagcagacaattcgaagacagatgaggtgtttct |
6119232 |
T |
|
| Q |
371 |
ttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatctgtgaagaaactgcggattccat |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6119233 |
ttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatttgtgaagaaactgcggattccat |
6119332 |
T |
|
| Q |
471 |
cttatccttatactaacaaactaacaaactaaatccaaacagatatcttcatcacatatttgaatgctaatcttatatctattcatccttac |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6119333 |
cttatccttatactaacaaactaacaaactaaatccaaacagatatcttcatcacatatttgaatgctaatcttatatctattcatccttac |
6119424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 6118947 - 6119047
Alignment:
| Q |
24 |
ccaagtatgttgagcaacctatttggatggtacttaccacgttgccgaattattagggtatttttactctgagaattagaggtgtaagaccaaaaccaaa |
123 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6118947 |
ccaagtatgttgagtaacctatttggatggtacttaccacgttgccgaattattagggtatttttactctgtgaattagaggtgtaagaccaaaaccaaa |
6119046 |
T |
|
| Q |
124 |
a |
124 |
Q |
| |
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| |
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| T |
6119047 |
a |
6119047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 369 - 494
Target Start/End: Complemental strand, 6174247 - 6174122
Alignment:
| Q |
369 |
ctttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatctgtgaagaaactgcggattcc |
468 |
Q |
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||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| || | |||||| |
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| T |
6174247 |
ctttattccttaataatacttatggttgattgtttcattaccaggaaactaagaatcttcaacaatcaccgccaccattagtgaagaatctacagattcc |
6174148 |
T |
|
| Q |
469 |
atcttatccttatactaacaaactaa |
494 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
6174147 |
atcttattcttatactaacaaactaa |
6174122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 369 - 494
Target Start/End: Complemental strand, 6136192 - 6136067
Alignment:
| Q |
369 |
ctttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatctgtgaagaaactgcggattcc |
468 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||| || | ||||| |
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| T |
6136192 |
ctttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatcttcaacaatcaccaccaccattagtgaagaatctacaaattcc |
6136093 |
T |
|
| Q |
469 |
atcttatccttatactaacaaactaa |
494 |
Q |
| |
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||| ||| |||||||||||||||||| |
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|
| T |
6136092 |
atcatattcttatactaacaaactaa |
6136067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 271 - 386
Target Start/End: Complemental strand, 6136338 - 6136223
Alignment:
| Q |
271 |
aacagagagacgagtcttccgttgattatgaattacactcttctatttctccgacaagattaaattcagcagacaattcgaagacagatgaggtgtttct |
370 |
Q |
| |
|
|||||||||| ||||| || | |||| ||||||| ||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| |
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| T |
6136338 |
aacagagagatgagtcgtctggtgatgatgaattgcacccttctatttctccaacaagattaaattcagcaaacaagtcgaagacagatgaggtttttct |
6136239 |
T |
|
| Q |
371 |
ttactccttaatgaca |
386 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
6136238 |
ttattccttaatgaca |
6136223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 6174371 - 6174278
Alignment:
| Q |
293 |
tgattatgaattacactcttctatttctccgacaagattaaattcagcagacaattcgaagacagatgaggtgtttctttactccttaatgaca |
386 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||| ||||| |
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| T |
6174371 |
tgatgatgatttacactcttctatttctccgacaagattaaattcaacagacaggtcgaagacagatgaggtttttctttattccttagtgaca |
6174278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 6173079 - 6173030
Alignment:
| Q |
513 |
atatcttcatcacatatttgaatgctaatcttatatctattcatccttac |
562 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
6173079 |
atatcttcatcggaaatttgaatgctaatcttatatctattcatccttac |
6173030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 6174525 - 6174443
Alignment:
| Q |
126 |
caaaaccaaaatttcttctactttagggactaaacaaattttttatagctaaaagcaaaaacagatacatctttgcatgtgaa |
208 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
6174525 |
caaaaccaaaatttcttctgggttaggggggaaaacaattttttatagctaagagcaaaaacagatttatttttgcatgtgaa |
6174443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 6119038 - 6119075
Alignment:
| Q |
176 |
aaaagcaaaaacagatacatctttgcatgtgaaaaaat |
213 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
6119038 |
aaaaccaaaaacagatacatctttgcatgtgaaaaaat |
6119075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 6136457 - 6136391
Alignment:
| Q |
147 |
tttagggactaaacaaattttttatagctaaaagcaaaaacagatacatctttgcatgtgaaaaaat |
213 |
Q |
| |
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||||||||||||| || ||||||||| ||| ||||||||||||| || |||| |||||||||||| |
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|
| T |
6136457 |
tttagggactaaaacaagtttttatagataatggcaaaaacagatatatttttgtatgtgaaaaaat |
6136391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 6174568 - 6174514
Alignment:
| Q |
71 |
aattattagggtatttttactctgagaattagaggtgtaagaccaaaaccaaaat |
125 |
Q |
| |
|
||||||||| || |||| ||||| ||||||||||| |||||||||||||||||| |
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|
| T |
6174568 |
aattattagaatagttttcctctgtgaattagaggtataagaccaaaaccaaaat |
6174514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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