View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_high_8 (Length: 224)
Name: NF9178_high_8
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 27761957 - 27761814
Alignment:
| Q |
1 |
ttaagagaaaagagcataaatacaacataca--tatcgtttacttttagccgtgatatcacataaaccaatgattcaatgtcagaatgttatgtatattt |
98 |
Q |
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| T |
27761957 |
ttaagagaaaagagcataaatacaacatacacatatcgtttacttttagccgtgatatcacataaaccaatgattcaatgtcagaatgttatgtataatt |
27761858 |
T |
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| Q |
99 |
ggctttttaaaacagtttccaaacttggcaacgttgccatatta |
142 |
Q |
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| T |
27761857 |
ggctttttaaaacagtttccaaacttggcaacgttgccatatta |
27761814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 27758059 - 27757896
Alignment:
| Q |
44 |
ttagccgtgatatcacataaaccaatgattcaatgtcagaatgttatgtatatttggctttttaaaacagtttccaaacttggcaacgttgccatattat |
143 |
Q |
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| T |
27758059 |
ttagcggtggtatcacataaaccaaggatacagtgtgagaatgttatgaatatttggctttttaaa-cagtttccaaacttggcaccgttgccatattat |
27757961 |
T |
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| Q |
144 |
acttaagtgtcttttgttgagttgaaatataaaaatatagagttgaaaatgaaacatacttttta |
208 |
Q |
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| T |
27757960 |
actaccgtgtcttttgttgtgttggaatataaaaatatatagttaaaaatgacacatacttttta |
27757896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 27761399 - 27761326
Alignment:
| Q |
141 |
tatacttaagtgtcttttgttgagttgaaatataaaaa--tatagagttgaaaatgaaacatactttttagaat |
212 |
Q |
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| T |
27761399 |
tatacttaagtgtcttttgttgagttgaaatataaaaatatatagagttgaaaatgaaacatactttttagaat |
27761326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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