View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_1 (Length: 758)
Name: NF9178_low_1
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 451 - 742
Target Start/End: Original strand, 6119133 - 6119424
Alignment:
| Q |
451 |
aacagagagacgagtcttccgttgattatgaattacactcttctatttctccgacaagattaaattcagcagacaattcgaagacagatgaggtgtttct |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6119133 |
aacagagagacgagtcttccgttgattatgaattacactcttctatttctccaacaagattaaattcagcagacaattcgaagacagatgaggtgtttct |
6119232 |
T |
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| Q |
551 |
ttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatctgtgaagaaactgcggattccat |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6119233 |
ttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatttgtgaagaaactgcggattccat |
6119332 |
T |
|
| Q |
651 |
cttatccttatactaacaaactaacaaactaaatccaaacagatatcttcatcacatatttgaatgctaatcttatatctattcatccttac |
742 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6119333 |
cttatccttatactaacaaactaacaaactaaatccaaacagatatcttcatcacatatttgaatgctaatcttatatctattcatccttac |
6119424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 6118764 - 6119047
Alignment:
| Q |
21 |
cacattctaagatttgcaagaataacccgaataccatggaagggattatcccagtatctatcacttggactctgttaatattaaatacagaatttcacct |
120 |
Q |
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| T |
6118764 |
cacattctaagatttgcaagaataacccgaataccatggaagggattatcctagtatctatcacttggactctgttaatattaaatacagaatttcacct |
6118863 |
T |
|
| Q |
121 |
gtttttgccattttcctgtgtttttgatgcctcgtgttaaagctaaaaacttttaagccttcttagagttctgagtggacacaccaagtatgttgagcaa |
220 |
Q |
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| T |
6118864 |
gtttttgcctttttcctgtgtttttgatgcctcgtgttaaagctaaaaacttttaagccttcttagagttctgagtggacacaccaagtatgttgagtaa |
6118963 |
T |
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| Q |
221 |
cctatttggatggtacttaccacgttgccgaattattagggtatttttactctgagaattagaggtgtaagaccaaaaccaaaa |
304 |
Q |
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| T |
6118964 |
cctatttggatggtacttaccacgttgccgaattattagggtatttttactctgtgaattagaggtgtaagaccaaaaccaaaa |
6119047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 6174247 - 6174122
Alignment:
| Q |
549 |
ctttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatctgtgaagaaactgcggattcc |
648 |
Q |
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||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| || | |||||| |
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| T |
6174247 |
ctttattccttaataatacttatggttgattgtttcattaccaggaaactaagaatcttcaacaatcaccgccaccattagtgaagaatctacagattcc |
6174148 |
T |
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| Q |
649 |
atcttatccttatactaacaaactaa |
674 |
Q |
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||||||| |||||||||||||||||| |
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| T |
6174147 |
atcttattcttatactaacaaactaa |
6174122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 549 - 674
Target Start/End: Complemental strand, 6136192 - 6136067
Alignment:
| Q |
549 |
ctttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaacaatcaccaccaccatctgtgaagaaactgcggattcc |
648 |
Q |
| |
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||||| |||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||| || | ||||| |
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| T |
6136192 |
ctttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatcttcaacaatcaccaccaccattagtgaagaatctacaaattcc |
6136093 |
T |
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| Q |
649 |
atcttatccttatactaacaaactaa |
674 |
Q |
| |
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||| ||| |||||||||||||||||| |
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| T |
6136092 |
atcatattcttatactaacaaactaa |
6136067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 6136338 - 6136223
Alignment:
| Q |
451 |
aacagagagacgagtcttccgttgattatgaattacactcttctatttctccgacaagattaaattcagcagacaattcgaagacagatgaggtgtttct |
550 |
Q |
| |
|
|||||||||| ||||| || | |||| ||||||| ||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| |
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| T |
6136338 |
aacagagagatgagtcgtctggtgatgatgaattgcacccttctatttctccaacaagattaaattcagcaaacaagtcgaagacagatgaggtttttct |
6136239 |
T |
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| Q |
551 |
ttactccttaatgaca |
566 |
Q |
| |
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||| |||||||||||| |
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| T |
6136238 |
ttattccttaatgaca |
6136223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 566
Target Start/End: Complemental strand, 6174371 - 6174278
Alignment:
| Q |
473 |
tgattatgaattacactcttctatttctccgacaagattaaattcagcagacaattcgaagacagatgaggtgtttctttactccttaatgaca |
566 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||| ||||| |
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| T |
6174371 |
tgatgatgatttacactcttctatttctccgacaagattaaattcaacagacaggtcgaagacagatgaggtttttctttattccttagtgaca |
6174278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 742
Target Start/End: Complemental strand, 6173079 - 6173030
Alignment:
| Q |
693 |
atatcttcatcacatatttgaatgctaatcttatatctattcatccttac |
742 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
6173079 |
atatcttcatcggaaatttgaatgctaatcttatatctattcatccttac |
6173030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 6174525 - 6174443
Alignment:
| Q |
306 |
caaaaccaaaatttcttctactttagggactaaacaaattttttatagctaaaagcaaaaacagatacatctttgcatgtgaa |
388 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
6174525 |
caaaaccaaaatttcttctgggttaggggggaaaacaattttttatagctaagagcaaaaacagatttatttttgcatgtgaa |
6174443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 6119038 - 6119075
Alignment:
| Q |
356 |
aaaagcaaaaacagatacatctttgcatgtgaaaaaat |
393 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
6119038 |
aaaaccaaaaacagatacatctttgcatgtgaaaaaat |
6119075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 6136457 - 6136391
Alignment:
| Q |
327 |
tttagggactaaacaaattttttatagctaaaagcaaaaacagatacatctttgcatgtgaaaaaat |
393 |
Q |
| |
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||||||||||||| || ||||||||| ||| ||||||||||||| || |||| |||||||||||| |
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| T |
6136457 |
tttagggactaaaacaagtttttatagataatggcaaaaacagatatatttttgtatgtgaaaaaat |
6136391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 6174568 - 6174514
Alignment:
| Q |
251 |
aattattagggtatttttactctgagaattagaggtgtaagaccaaaaccaaaat |
305 |
Q |
| |
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||||||||| || |||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
6174568 |
aattattagaatagttttcctctgtgaattagaggtataagaccaaaaccaaaat |
6174514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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