View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_12 (Length: 395)
Name: NF9178_low_12
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 51030636 - 51030310
Alignment:
| Q |
18 |
cttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030636 |
cttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
51030537 |
T |
|
| Q |
118 |
tgctttagaggatggagtggttttagcaaggtgtttagccgaggccttttcgaagaaaccaaacnnnnnnnnnnnnnnnnnnnnntacaaaaggattgag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51030536 |
tgctttagaggatggagtggttttagcaaggtgtttagccgaggccttttcgaagaaaccaaa---------ggaagaagaagaatacaaaaggattgag |
51030446 |
T |
|
| Q |
218 |
gaaagtttgaagaaatatgcaaatgagagaaaatggagatgcattgatctcattattgcaaattattttgtgggttatattcaggaaagtggttcaaaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||| |
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| T |
51030445 |
gaaagtttgaagaaatatgcaaatgagagaaaatggagatgcattgatctcattactgcatcttatattgtgggttatattcaacaaagtggttcaaaat |
51030346 |
T |
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| Q |
318 |
tggttaacttcttcagggataaaattttggctacat |
353 |
Q |
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||||||||||| |||||||||||| ||||||||| |
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| T |
51030345 |
ctgttaacttctttagggataaaattctggctacat |
51030310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 51063388 - 51063226
Alignment:
| Q |
18 |
cttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
117 |
Q |
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| T |
51063388 |
cttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
51063289 |
T |
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| Q |
118 |
tgctttagaggatggagtggttttagcaaggtgtttagccgaggccttttcgaagaaaccaaa |
180 |
Q |
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| T |
51063288 |
tgctttagaggatggagtggttttagcaaggtgtttagccgaggccttttcgaagaaaccaaa |
51063226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 51063200 - 51063027
Alignment:
| Q |
203 |
tacaaaaggattgaggaaagtttgaagaaatatgcaaatgagagaaaatggagatgcattgatctcattattgcaaattattttgtgggttatattcagg |
302 |
Q |
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|||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51063200 |
tacaaaaggattgaggaaggtttcaagaaatatgcaaaggagagaagatggagatgcattgatctcattattgcaaattattttgtgggttctattcagg |
51063101 |
T |
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| Q |
303 |
aaagtggttcaaaattggttaacttcttcagggataaaattttggctacatacttagctagtcagttattgaag |
376 |
Q |
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| T |
51063100 |
aaagtggttcaaaattggttaacttcttcagggataaaattttggctacatacttagctagtcagttattgaag |
51063027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 51068957 - 51068810
Alignment:
| Q |
18 |
cttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
117 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51068957 |
cttgggagcttataatgggaaatattagtaaaggaaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
51068858 |
T |
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| Q |
118 |
tgctttagaggatggagtggttttagcaaggtgtttagccgaggcctt |
165 |
Q |
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||||||||||||||| |||||||||||||||||| |||| |||||||| |
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| T |
51068857 |
tgctttagaggatggggtggttttagcaaggtgtctagctgaggcctt |
51068810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 51034914 - 51034605
Alignment:
| Q |
18 |
cttgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttc |
117 |
Q |
| |
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||||||| || || |||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||| |||||| ||||||||||||| |
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| T |
51034914 |
cttgggaactcataatgggaaacattagtaaaaacaatgtttgtgttgctggagatgctttgcacccaatggcaccttatcttgcccaaggggggtgttg |
51034815 |
T |
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| Q |
118 |
tgctttagaggatggagtggttttagcaaggtgtttagccgaggccttttcgaagaaaccaaacnnnnnnnnnnnnnnnnnnnnntacaaaaggattgag |
217 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |||| ||||| ||||||||||| || ||||||||||| |
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| T |
51034814 |
tgctttagaggatggggtggttttagcaaggtgcttaggtgaggtattttccaagaaaccaaaggaagaagaagaagaagaagaatataaaaggattgaa |
51034715 |
T |
|
| Q |
218 |
gaaagtttgaagaaatatgcaaatgagagaaaatggagatgcattgatctcattattgcaaattattttgtgggttatattcaggaaagtggttcaaaat |
317 |
Q |
| |
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||| ||||||||||||||||||| ||||||| ||||||||| ||||||| |||| | ||| |||| ||||||||| |||||| |||||||||||||||| |
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| T |
51034714 |
gaaggtttgaagaaatatgcaaaggagagaagatggagatgggttgatctaattactacaagttatattgtgggttctattcatgaaagtggttcaaaat |
51034615 |
T |
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| Q |
318 |
tggttaactt |
327 |
Q |
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| |||||||| |
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| T |
51034614 |
ttgttaactt |
51034605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 203 - 360
Target Start/End: Original strand, 40618200 - 40618357
Alignment:
| Q |
203 |
tacaaaaggattgaggaaagtttgaagaaatatgcaaatgagagaaaatggagatgcattgatctcattattgcaaattattttgtgggttatattcagg |
302 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||| | | |||| ||||||||| ||||||| |
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| T |
40618200 |
tacaaaaggattgaggaaggtttgaagaaatatgcaaaggagagaagatggagatccattgatctcattggtagatcttatgttgtgggttctattcagc |
40618299 |
T |
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| Q |
303 |
aaagtggttcaaaattggttaacttcttcagggataaaattttggctacatacttagc |
360 |
Q |
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|| |||||||||||||||| |||||||| || ||||||||||||||||||| |||||| |
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| T |
40618300 |
aaggtggttcaaaattggtcaacttctttagagataaaattttggctacattcttagc |
40618357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 40618026 - 40618162
Alignment:
| Q |
20 |
tgggagcttatgatgggaaatattagtaaaggcaatgtttgtgttgctggagatgctttacaccctatgacacctgatcttggtcaaggggggtgttctg |
119 |
Q |
| |
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|||||||| || |||||||||||||| ||||| ||||||||||||| ||| |||||||||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
40618026 |
tgggagctcataatgggaaatattagcaaaggaaatgtttgtgttgttggtgatgctttacactctatggcacctgatcttgcccaaggggggtgttctg |
40618125 |
T |
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| Q |
120 |
ctttagaggatggagtggttttagcaaggtgtttagc |
156 |
Q |
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||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
40618126 |
ctttagaagatggggtggtattagcaaggtgcttagc |
40618162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 51068781 - 51068712
Alignment:
| Q |
203 |
tacaaaaggattgaggaaagtttgaagaaatatgcaaatgagagaaaatggagatgcattgatctcatta |
272 |
Q |
| |
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|||||||| ||||| || | ||||||||||||||||| || |||| |||||||||||||||||| |||| |
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| T |
51068781 |
tacaaaagaattgaacaagggttgaagaaatatgcaaaagaaagaagatggagatgcattgatcttatta |
51068712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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