View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_15 (Length: 279)
Name: NF9178_low_15
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 36746505 - 36746263
Alignment:
| Q |
19 |
tctagaacaccaaaatacaacatttgattaacaaacaaacatacttgtacatagacaagatcagtctcatctatgtattttattgaaagttgcagcaaca |
118 |
Q |
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| T |
36746505 |
tctagaacaccaaaatacaacatttgattaacaaacaaacatatatgtacatagacaagatcagtctcatctatgtattttattgaaagttgcagcaaca |
36746406 |
T |
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| Q |
119 |
atacttgtagggtagcttaaagagatccttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746405 |
atacttgtagggtagcttaaagagatccttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgta |
36746306 |
T |
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| Q |
219 |
gggcatcttaaccgggccagttcggttaagcaaatctggttct |
261 |
Q |
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| T |
36746305 |
gggcatcttaaccgggccagttcggttaagcaaatctggttct |
36746263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 29014439 - 29014396
Alignment:
| Q |
66 |
tacatagacaagatcagtctcatctatgtattttattgaaagtt |
109 |
Q |
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| T |
29014439 |
tacatagacaacatcagtctcatctatgtattttattgaaagtt |
29014396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 6361701 - 6361781
Alignment:
| Q |
147 |
ttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
227 |
Q |
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| T |
6361701 |
ttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatctt |
6361781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 6287290 - 6287358
Alignment:
| Q |
159 |
actattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
227 |
Q |
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|||||||||||| |||||||||||||| ||||| |||| | ||| |||||||||| || |||||||| |
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| T |
6287290 |
actattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatctt |
6287358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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