View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_17 (Length: 264)
Name: NF9178_low_17
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 27762128 - 27762232
Alignment:
| Q |
143 |
caatattatttaaagacctcgaataatgtctcaaggacgttcatttgtatttcataaaatgtaaaagaaacaaaaggaaaatatgattttaccgaatcta |
242 |
Q |
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| T |
27762128 |
caatattgtttaaagacctcgaataatgtctcaaggacgctcatttgtatttcataaaatgtaaaagaaacaaaaggaaaatatgattttaccgaatctg |
27762227 |
T |
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| Q |
243 |
aacaa |
247 |
Q |
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||||| |
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| T |
27762228 |
aacaa |
27762232 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27761983 - 27762036
Alignment:
| Q |
1 |
gtatgttgtattttgttacgagcactcgttaatgtacgcttttgcgggcattcg |
54 |
Q |
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|||||||| |||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
27761983 |
gtatgttgcattttgttacaagcactcgttaatgtacgctcttgcgagcattcg |
27762036 |
T |
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