View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_2 (Length: 679)
Name: NF9178_low_2
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Original strand, 47285438 - 47286100
Alignment:
| Q |
8 |
aggaaggatatttgtgtttattttcatataatttagttggctactgtctggatcatttggaaggagcgtaacatattgagatttcaaaacaaagagtcat |
107 |
Q |
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| T |
47285438 |
aggaaggatatttgtctttattttcatattatttagttggctactg----gatcatttggaaggagcgtaacatgctgagatttcaaaacaaagagtcat |
47285533 |
T |
|
| Q |
108 |
ctatcgctaagttgatcgacatagtgaaacttcattcttatgatttt-----------aacaagctaagcaaaacaaaccaaaccacttatgattttatt |
196 |
Q |
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| T |
47285534 |
ctatcgctaagttgatcgacatagtgaaacttcattcttatgattttaacatgtttttaacaagctaagcaaaacaaaccaaaccacttatgattttatt |
47285633 |
T |
|
| Q |
197 |
tttggatcaaatgtattttcttacctcaaaaccaaactagaccgcaccgcaccacacacacctagttgctagacttgccaaggtttcaatatcattcagt |
296 |
Q |
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| T |
47285634 |
tttggatcaaatgtattttcttacctcaaaacaaaactagaccgcaccgcaccgcacgcacctagttgctagacttgccaaggtttcaatatcattcagt |
47285733 |
T |
|
| Q |
297 |
ggagaacacatgtcatttccctctcatagaagagcagtccaaattgtggaagacaattgcaaaagctaggaaccgaataaggacatgctcatggctagaa |
396 |
Q |
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| T |
47285734 |
ggagaacacatgtcatttccctctcatagaagagcagtccaaattgtggaagacaattgcaaaagctaggaaccgaataaggacatgctcatggctagaa |
47285833 |
T |
|
| Q |
397 |
accacagaagggccaagcataagagaatcagttttcagaaccggtgaaagtgttttagaatggcccacttcgttcccttttttccctattaagaccaaat |
496 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47285834 |
accaaagaagggccaagcataagagaataagttttcagaaccggggaaagtgttttagaatggcccacttcgttcccttttttccctattaaaaccaaat |
47285933 |
T |
|
| Q |
497 |
cctatggctgtgtgtggatacgacgagcttgaccgaacctcgaaaggccaaaatcaactgtaccaggatcatgtagcactgcaagattgtgttatgcaac |
596 |
Q |
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| T |
47285934 |
cctatggctgtgtgtggatacgactagcttgaccgaacctcgaaaggccaaaatcaactgtaccaggatcatgtagcaccgcaagattgtgttatgcaac |
47286033 |
T |
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| Q |
597 |
acttttttgggttagacactcttattccttaaatggtgcctatctgttattgcttgctgacacgtga |
663 |
Q |
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| T |
47286034 |
acttttttgggttagacactcttattccttaaatggtgcctatctgtcattgcttgctgacacgtga |
47286100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 47279965 - 47280067
Alignment:
| Q |
296 |
tggagaacacatgtcatttccctctca----tagaagagcagtccaaattgtggaagacaattgcaaaagctaggaaccgaataaggacatgctcatggc |
391 |
Q |
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||||||| |||| | |||||||||||| |||||||||| || || |||||||||| || ||||||| || ||||| ||| ||||||||||||| || |
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| T |
47279965 |
tggagaaaacatttaatttccctctcaaacctagaagagcaatctaatttgtggaagaaaaatgcaaaatcttagaacctaatgaggacatgctcatagc |
47280064 |
T |
|
| Q |
392 |
tag |
394 |
Q |
| |
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||| |
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|
| T |
47280065 |
tag |
47280067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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