View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_23 (Length: 209)
Name: NF9178_low_23
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 29953862 - 29954032
Alignment:
| Q |
22 |
taacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaatgctgatga |
121 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |
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| T |
29953862 |
taacaattgatggatattttataaaggaaaagactcgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgccgaaga |
29953961 |
T |
|
| Q |
122 |
attttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
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|||||| | || || || |||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
29953962 |
attttacccagagagattcattggcaagaaaatgaattatcaaggacaagagtttgaatctctaccatttg |
29954032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 30007402 - 30007580
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
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||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||| |
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| T |
30007402 |
agagagcataacaattgatggatattttataacgaaaaagactcgagttatagtaaatgcatgggctattgggagagattgtaacgtttggtcagaaaat |
30007501 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
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|||||||||||||| | || || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
30007502 |
gctgatgaattttacccagagagatttattgacaagaaaatgaattatcaaggacatgagtttgaatctataccatttg |
30007580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 29965126 - 29965300
Alignment:
| Q |
18 |
agcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaatgctg |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| |
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| T |
29965126 |
agcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatatttggttagaaaacgctg |
29965225 |
T |
|
| Q |
118 |
atgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
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|||| ||||||| || || |||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
29965226 |
atgagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctataccatttg |
29965300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 30009672 - 30009498
Alignment:
| Q |
18 |
agcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaatgctg |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| |
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| T |
30009672 |
agcataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatatttggttagaaaacgctg |
30009573 |
T |
|
| Q |
118 |
atgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
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|||| ||||||| || || |||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
30009572 |
atgagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctataccatttg |
30009498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 29946893 - 29947071
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
| |
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|||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||| |
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| T |
29946893 |
agagagtataacaattgatggatattttataatggaaaagacacgagttatagtaaatgcatgggctatagagagagattctagtgtttggtcagaaaat |
29946992 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
|
||| |||||| ||| ||||| |||||||||| ||||||||||||| ||||||| || || ||||||||||||||| |
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| T |
29946993 |
tatgaagaatttcatccagaaagatttattgacatgaaaatgaattatgaaggacataagtttaaatctataccatttg |
29947071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 29995613 - 29995790
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
| |
|
|||||||| || ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| || | |||||||||||||||||| |
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| T |
29995613 |
agagagcacaataattgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaat |
29995712 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
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|| || |||||||||| || || |||||||| || ||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
29995713 |
gccgaagaattttatccagagagatttattgagaa-aaactgaattatctcggacaagagtttgaatctataccatttg |
29995790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 30043596 - 30043418
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| || | |||||||||||||||||| |
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| T |
30043596 |
agagagcacaacaattgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaat |
30043497 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
|
||| | |||||||| | || || ||| | || || ||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
30043496 |
gctaaagaattttacccagagagatttgtagagaaaaaaatgaattatcttggacaagagtttgaatctataccatttg |
30043418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 30001286 - 30001464
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
| |
|
||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| || |||||| || | ||||||||||||||||| |
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|
| T |
30001286 |
agagaacataacaattgatgattattctataaaagaaaagacacgagttatagtaaatgcatgggcaattgggagagatcctgatgtttggtcagaaaat |
30001385 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
|
||||| |||||||| | || || |||||||| || ||||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
30001386 |
gctgaagaattttacccagagagatttattgagaaaaaaatgaattatctcggacaagagtttgaatctataccatttg |
30001464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 29944921 - 29945099
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||| |||| || | |||||||||||||||||| |
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|
| T |
29944921 |
agagaacataacaattgatggttattttgtaaaggaaaagacacgagttatagtaaatgcatttacaatagcgagagatcctaatgtttggtcagaaaat |
29945020 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
|
||||| ||||||| || || ||||||||| | |||||| |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
29945021 |
gctgaagaattttgtccagagaggtttattaataagaaattgaattatgaaggacaagagtttgaaagtataccatttg |
29945099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 30068113 - 30067935
Alignment:
| Q |
14 |
agagagcataacaattgatggatatttcataaaggaaaagacacgagttatagtaaatgcatgggctatagggagaaattcaaatgtttggtcagaaaat |
113 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||| || |||| |||||||||||||| ||||||||| || | |||||||||||||||||| |
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|
| T |
30068113 |
agagaacataacaattgatgattattttataaaggaaaagacgagaattatggtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaat |
30068014 |
T |
|
| Q |
114 |
gctgatgaattttatcgcgaaaggtttattgacaagaaaatgaattatcaaggacaagagcttgaatctataccatttg |
192 |
Q |
| |
|
||||| |||||||||| | || |||||||| |||||||||||||||||| |||||||| ||||| | ||||||||| |
|
|
| T |
30068013 |
gctgaagaattttatccaaagagatttattgaaaagaaaatgaattatcaaagacaagagtttgaaagtttaccatttg |
30067935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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