View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9178_low_4 (Length: 615)
Name: NF9178_low_4
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 615
Target Start/End: Original strand, 51062439 - 51063050
Alignment:
| Q |
16 |
agatactaacagatcacccactaaataggttcctaaaacaacaggagttgaaccacggcattgcaggagaggcaactccttaccaactttcactatcgga |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51062439 |
agatactaacaaatcacccactaaataggttcctacaacaacaggagttgaaccgcggcattgaaggagagacaactccttaccaactttcactatcgga |
51062538 |
T |
|
| Q |
116 |
ttatcttgtttaaattttattttacatgggaaaagttgaatagcaacacaataaaatacgattgaggtatgtacattttaaattaagactcgttcttatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51062539 |
ttatcttgtttaaattttattttacatgggaaaagttgaatagcaacacaataaaatatgattgaggtatgtacattttaaattaagactcgttcttatc |
51062638 |
T |
|
| Q |
216 |
caacttcttgtaattttctttataaatccaaagttcattaaaatcaagttatgatttatggaggttttgcataacatgaaattgaagcaaaggtagttaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51062639 |
caacttcttgtaattttctttataaatccaaagttcattaaaatcaagttatgatttatggaggttttgcataacatgaaattgaagcaaaggtagttaa |
51062738 |
T |
|
| Q |
316 |
ctcaaataagggcttgaactgtcaatgtcattttgtcaggtaaagatatctaggagatttcccactg--------------------cacaatgtatatt |
395 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51062739 |
ctcaaattatggcttgaactgtcaatgtcattttgtcaggtaaagatatctaggagatttcccactgcaatgcaatagaaagcatttcacaatgtatatt |
51062838 |
T |
|
| Q |
396 |
gaaatttcaggcattttttagataacacaactcatttcttaaccaacggcaagatgaaatgcgacattctggactaagcattatacaatatatataagtt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51062839 |
gaaatttcaggcattttttagataacacaactcatttcttaattaacggcaagatgaaatgcgacattgtggactaagcattatacaatatatataagtt |
51062938 |
T |
|
| Q |
496 |
ttggtnnnnnnnnnnnnnnnnntatcatacaagataattgtgtcactatcctaattaagggctattttttagtttaccacaatcaaaattagatttcttc |
595 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51062939 |
ttggt--------aaaaaaaaatatcatacaagataattgtgtcactactctaattaagggctattttttagtttaccacaatcaaaattagatttcttc |
51063030 |
T |
|
| Q |
596 |
aataactgactagctaagta |
615 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51063031 |
aataactgactagctaagta |
51063050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 611
Target Start/End: Original strand, 51068564 - 51068627
Alignment:
| Q |
546 |
ctaattaagggctattttttagtttaccacaatcaaaattagatttcttcaataactgactagcta |
611 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
51068564 |
ctaattaagggctaattg--agtttaccacaatcaaaaccagatttcttgaataactgaccagcta |
51068627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University