View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9178_low_6 (Length: 612)

Name: NF9178_low_6
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9178_low_6
NF9178_low_6
[»] chr4 (27 HSPs)
chr4 (103-598)||(2814733-2815228)
chr4 (37-564)||(38011234-38011766)
chr4 (113-588)||(35259907-35260367)
chr4 (129-544)||(20649959-20650372)
chr4 (236-345)||(44311619-44311727)
chr4 (258-519)||(18402686-18402944)
chr4 (36-80)||(2814689-2814733)
chr4 (458-543)||(44136775-44136860)
chr4 (458-521)||(1745422-1745485)
chr4 (260-343)||(27433332-27433415)
chr4 (117-303)||(44206766-44206952)
chr4 (184-302)||(32338357-32338475)
chr4 (250-311)||(44136898-44136959)
chr4 (260-311)||(2406488-2406539)
chr4 (256-310)||(22065827-22065881)
chr4 (256-346)||(29847728-29847817)
chr4 (261-311)||(41421371-41421421)
chr4 (249-311)||(41839640-41839702)
chr4 (126-208)||(53813689-53813771)
chr4 (242-311)||(5383822-5383890)
chr4 (259-348)||(23096508-23096597)
chr4 (259-311)||(3674379-3674431)
chr4 (460-543)||(25100345-25100428)
chr4 (259-301)||(10330011-10330053)
chr4 (458-520)||(44311841-44311903)
chr4 (43-88)||(23096289-23096334)
chr4 (127-208)||(25100573-25100654)
[»] chr8 (11 HSPs)
chr8 (60-588)||(41566101-41566631)
chr8 (210-588)||(1029485-1029865)
chr8 (319-588)||(11954462-11954725)
chr8 (121-311)||(18003728-18003918)
chr8 (236-311)||(10659082-10659157)
chr8 (126-198)||(5949910-5949982)
chr8 (367-477)||(38731819-38731929)
chr8 (130-308)||(8869692-8869866)
chr8 (236-290)||(33525411-33525465)
chr8 (258-299)||(14442519-14442560)
chr8 (258-303)||(14575295-14575340)
[»] chr6 (18 HSPs)
chr6 (36-429)||(31946260-31946657)
chr6 (272-523)||(3008661-3008906)
chr6 (56-310)||(592611-592864)
chr6 (256-443)||(15563566-15563753)
chr6 (256-346)||(30625580-30625669)
chr6 (257-311)||(6189847-6189901)
chr6 (458-549)||(8209969-8210060)
chr6 (248-297)||(17458975-17459024)
chr6 (261-346)||(32718098-32718182)
chr6 (164-311)||(6257419-6257567)
chr6 (458-501)||(3709550-3709593)
chr6 (153-208)||(6189953-6190008)
chr6 (462-521)||(29032685-29032744)
chr6 (462-521)||(31304016-31304075)
chr6 (126-208)||(30892143-30892225)
chr6 (247-308)||(29032896-29032957)
chr6 (156-216)||(1717512-1717572)
chr6 (449-493)||(6257243-6257287)
[»] chr1 (30 HSPs)
chr1 (95-588)||(48563174-48563670)
chr1 (319-588)||(52148736-52149013)
chr1 (41-208)||(18650134-18650301)
chr1 (163-311)||(15309133-15309279)
chr1 (119-311)||(18628737-18628930)
chr1 (110-335)||(14167631-14167845)
chr1 (256-311)||(11871512-11871567)
chr1 (247-311)||(26759458-26759522)
chr1 (256-311)||(23777126-23777180)
chr1 (264-311)||(42241478-42241525)
chr1 (236-301)||(26925005-26925070)
chr1 (257-345)||(2688245-2688330)
chr1 (458-514)||(26925118-26925174)
chr1 (460-555)||(2688447-2688547)
chr1 (458-521)||(23777027-23777090)
chr1 (256-311)||(33323984-33324039)
chr1 (461-519)||(15394629-15394687)
chr1 (126-208)||(26762455-26762537)
chr1 (258-307)||(25023301-25023350)
chr1 (458-519)||(50959523-50959584)
chr1 (152-311)||(14393246-14393406)
chr1 (454-534)||(25023482-25023562)
chr1 (458-518)||(33323885-33323945)
chr1 (461-536)||(16256445-16256520)
chr1 (236-311)||(16256561-16256635)
chr1 (461-536)||(27901223-27901298)
chr1 (468-546)||(19757718-19757796)
chr1 (39-88)||(2688022-2688071)
chr1 (458-514)||(18628967-18629023)
chr1 (460-544)||(18650445-18650529)
[»] chr7 (12 HSPs)
chr7 (36-575)||(28002574-28003113)
chr7 (36-537)||(16994449-16994948)
chr7 (256-544)||(10623314-10623599)
chr7 (67-560)||(27899946-27900441)
chr7 (119-345)||(20118030-20118254)
chr7 (39-208)||(24957340-24957508)
chr7 (448-556)||(10019739-10019849)
chr7 (451-543)||(20118253-20118343)
chr7 (117-192)||(31727444-31727519)
chr7 (258-311)||(9957295-9957348)
chr7 (256-346)||(24957549-24957640)
chr7 (247-311)||(5907101-5907165)
[»] chr3 (16 HSPs)
chr3 (37-588)||(35739758-35740313)
chr3 (449-587)||(7903391-7903530)
chr3 (152-214)||(5450244-5450306)
chr3 (106-306)||(28421307-28421508)
chr3 (262-348)||(9192326-9192412)
chr3 (481-523)||(24405024-24405066)
chr3 (256-345)||(44558472-44558561)
chr3 (41-311)||(47005531-47005801)
chr3 (260-344)||(557578-557662)
chr3 (458-522)||(47005839-47005903)
chr3 (281-344)||(17766018-17766080)
chr3 (281-344)||(19067338-19067400)
chr3 (256-311)||(47720914-47720969)
chr3 (256-310)||(30499007-30499061)
chr3 (152-345)||(51537389-51537579)
chr3 (256-348)||(26373385-26373477)
[»] chr5 (8 HSPs)
chr5 (36-313)||(2770673-2770943)
chr5 (255-431)||(43168547-43168724)
chr5 (50-346)||(19932118-19932415)
chr5 (458-544)||(24099391-24099480)
chr5 (236-308)||(12466240-12466312)
chr5 (260-310)||(24351802-24351852)
chr5 (507-555)||(17589916-17589964)
chr5 (41-89)||(24100883-24100931)
[»] chr2 (19 HSPs)
chr2 (272-537)||(39228869-39229136)
chr2 (255-516)||(12419331-12419595)
chr2 (255-516)||(12431391-12431655)
chr2 (236-345)||(18481892-18481999)
chr2 (236-521)||(5136174-5136454)
chr2 (126-208)||(8216548-8216630)
chr2 (458-555)||(4730647-4730749)
chr2 (152-311)||(38002109-38002269)
chr2 (56-428)||(4724422-4724797)
chr2 (255-346)||(14694901-14694992)
chr2 (257-303)||(39711495-39711541)
chr2 (228-301)||(3388323-3388396)
chr2 (258-311)||(9848196-9848249)
chr2 (257-345)||(4730864-4730949)
chr2 (238-310)||(22193662-22193734)
chr2 (458-521)||(18482109-18482172)
chr2 (507-558)||(35658031-35658082)
chr2 (458-558)||(20105294-20105400)
chr2 (256-293)||(33050829-33050866)
[»] scaffold0174 (1 HSPs)
scaffold0174 (257-554)||(30528-30829)
[»] scaffold0003 (1 HSPs)
scaffold0003 (458-543)||(353236-353321)
[»] scaffold0178 (1 HSPs)
scaffold0178 (152-208)||(9313-9369)
[»] scaffold0042 (1 HSPs)
scaffold0042 (256-348)||(31130-31222)


Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 103 - 598
Target Start/End: Original strand, 2814733 - 2815228
Alignment:
Q  103 ataaaaacagacctaatggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |    
T  2814733 ataaaaacagacctaatggatccactctaatctatcataacaaagttcaactaatcacggacgcaatccactgaacctgcgtacgggcgcgaaaccaatt 2814832  T
Q  203 tacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2814833 tacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaacgacgaatggatcgattgccaacacggtatcaaaatccaagtgccaac 2814932  T
Q  303 aactccctgcagaagacagcaaccataacagctctttcgagcataaataccagtgtaggaatacaagacgacttgaaacctgcagaccttaacagacctt 402  Q
    ||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2814933 aactccctgcacaagacatcaaacataacagctctttctagcataaataccagtgtaggaatacaagacgacttgaaacctgcagacctcaacagacctt 2815032  T
Q  403 aaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaa 502  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2815033 aaaacatcagagagtcgaagcagttaagcaaccaaagacaacggaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaa 2815132  T
Q  503 ccaaaccctttcgggttaacataaccatacccttttgggtttataaaaccaaaccacatcaaaataggccaaaagtcttcgaccacaacgtctctg 598  Q
    ||| |||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2815133 ccagacccttccgagttaacataaccataccctctcgggtttataaaaccaaaccacatcaaaataggccaaaagtcttcgaccacaacgtctctg 2815228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 37 - 564
Target Start/End: Original strand, 38011234 - 38011766
Alignment:
Q  37 agagagatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgata-aaaacagacctaatggatccactctaatct 135  Q
    |||| |||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||  |||| |    
T  38011234 agagtgatacaaagattggggggacatgaaacctgacccaggtacaacccaaaagggaatacatcgatataaaacagacctagtggatcaaccttaatat 38011333  T
Q  136 atcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaa-tatgagaatttaacctttgccaa 234  Q
    ||| |||||||  || ||||| ||| | |||||||||  ||||| || ||||||||  ||||||||||||||| || |||||||| | || || || |||    
T  38011334 atcgtaacaaaaatctactaaccacaggcgcaacccagagaacccgcctacgggcgtgaaaccaagttacaaaaaaatatgagaagtaaatctctgtcaa 38011433  T
Q  235 taacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagc 334  Q
    ||| | |||   |||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||| |  |  |||||| ||||| |||    
T  38011434 taataattaaggtttaaaaaaggcgaatggatcgaccgtcaacacggtaacaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagc 38011533  T
Q  335 tctttcgagcat-aaataccag--tgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagc 431  Q
    |||||||||||  |||||||||  ||||||   || |||| |||||||||||||||| || |||||||||  ||||||||||||||| ||||| ||| |     
T  38011534 tctttcgagcaccaaataccagagtgtaggcgaacgagacaacttgaaacctgcagatctcaacagacctggaaacatcagagagtctaagcaatcaggt 38011633  T
Q  432 aaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccata 531  Q
     |||||| ||||| |  ||||||| ||| |||||||| ||| ||||  ||||||||||||||| |||||||||| |||||| ||||||| || |||||||    
T  38011634 caccaaacacaaccagcttcaaacctacacgtaagaattcagatcgagggatgagtccaatacgttagtaaccagacccttgcgggttatcagaaccata 38011733  T
Q  532 cccttttgggtttataaaaccaaaccacatcaa 564  Q
    |||||  | ||||   |||||||||||||||||    
T  38011734 cccttacgagttttagaaaccaaaccacatcaa 38011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 113 - 588
Target Start/End: Original strand, 35259907 - 35260367
Alignment:
Q  113 acctaatggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaat 212  Q
    ||||| |||||| |||||||||||||||||||||  || |||||||||| | |||| |||  |||||||| ||||||||| |||||| |||  ||| ||     
T  35259907 acctagtggatcaactctaatctatcataacaaaaatccactaatcacg-atgcaatccagagaacctgcatacgggcgcgaaaccaggtttaaaaaaag 35260005  T
Q  213 atgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgc 312  Q
            | | ||||||| ||||||||| |   |||||||||| |||||| || ||| |||||||||     ||||| |||||||||||| || ||||     
T  35260006 --------taagcctttgcaaataacagtcatggtttaaaaacgtcgaatgaattgaccgccaacacg-----aaaattcaagtgccaacagctgcctga 35260092  T
Q  313 agaagacagcaaccataacagctctttcgagcat-aaatacca-gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatc 410  Q
    | ||  |||||| ||||| ||||||||||||||| |||||| | ||||||| | |||||| |||| |||||||| ||| || ||||||||| |||||||     
T  35260093 acaaagcagcaagcataaaagctctttcgagcatcaaatacaaagtgtaggcagacaagatgactagaaacctggagatctcaacagacctgaaaacat- 35260191  T
Q  411 agagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccc 510  Q
      | | | |||||||||  || | |||| |||||   |||||||||||||| |||||||||| ||||  |||||| |||||||  ||||||  |||||||    
T  35260192 --acaattgaagcagtcgggccatcaaacacaacatgattcaaacatacgcataagaactcaaatcgatggatgaatccaatatgttagtattcaaaccc 35260289  T
Q  511 tttcgggttaacataaccatacccttttgggtttataaaaccaaaccacatcaaaa-taggccaaaagtcttcgaccac 588  Q
    |||| |||||||| |||||||||| ||  ||||||  |||||||||||||||||||  ||||||||| ||||| |||||    
T  35260290 tttcaggttaacagaaccataccccttcaggttta-gaaaccaaaccacatcaaaacgaggccaaaattcttcaaccac 35260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 544
Target Start/End: Complemental strand, 20650372 - 20649959
Alignment:
Q  129 ctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctt 228  Q
    |||||||||| |||||||  |  ||||||||||| |||||| || ||||||||||||| ||||| ||||||||||||||| |||||||  | | |||       
T  20650372 ctaatctatcctaacaaaaattcactaatcacgggcgcaactcagcgaacctgcgtacaggcgcgaaaccaagttacaaaaaatatgaatagtgaacgaa 20650273  T
Q  229 tgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccat 328  Q
    ||| || || ||||  |  || |||  |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||   ||  |||||| | |    
T  20650272 tgc-aagaatagttcaagcttcaaactggcgaacggatcgactgccaacacggtaacaaaatccaagtgccaacagctccctgagcaaagcagcaagcgt 20650174  T
Q  329 aacagctctttcgagcata-aataccagtgt-aggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagt 426  Q
    || |||||||||||||||| | |||||| ||  || | ||| || | ||||||||||||||| || ||||||||  | |||||||||||||||||| ||     
T  20650173 aagagctctttcgagcatatagtaccagagtgtggcaaacatgatggcttgaaacctgcagatctcaacagacc-cagaacatcagagagtcgaagaagc 20650075  T
Q  427 caagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataa 526  Q
     |    |||||| || || |  |||||||| | ||||||||||||| || |  |||||||| |||||| ||| ||||||||||||||| |||||   |||    
T  20650074 aacatcaccaaacaccacaagtttcaaacagatgcgtaagaactcagattgagggatgagttcaatacgttaataaccaaaccctttcaggtta--ttaa 20649977  T
Q  527 ccatacccttttgggttt 544  Q
    ||||||||||| ||||||    
T  20649976 ccataccctttcgggttt 20649959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 44311619 - 44311727
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagct 335  Q
    ||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| || ||||||| | ||| |||||| ||||| ||||    
T  44311619 aacagttaggatttaaaaatggcgaatggatcgaccgccagcacggtatcaaaatccaagtgccatcagctccctgaacaag-cagcaagcataagagct 44311717  T
Q  336 ctttcgagca 345  Q
    ||||||||||    
T  44311718 ctttcgagca 44311727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 258 - 519
Target Start/End: Original strand, 18402686 - 18402944
Alignment:
Q  258 cgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataaa-tacca-- 354  Q
    ||||||||||||| ||||||||  ||||||| ||| |||| ||||||||||||| | ||  |||||| ||||| |||||||||||| ||||| || ||      
T  18402686 cgaatggatcgaccgccaacacaatatcaaactcctagtgacaacaactccctgaacaaagcagcaagcataa-agctctttcgagtataaagtatcaat 18402784  T
Q  355 gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaa 454  Q
    ||||| | | |||||||||||||||| ||||||| || |||| | ||  ||||||||||||| | ||| ||||| |  |||||| ||||   ||  ||||    
T  18402785 gtgta-gcagacaagacgacttgaaatctgcagatctcaacaaatctggaaacatcagagagacaaagaagtcatgtcaccaaacacaattcaaaacaaa 18402883  T
Q  455 catacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggtt 519  Q
    |||    ||||||||||| ||||  |||||||| |||||| |||||||||| |||||||||||||    
T  18402884 cat----gtaagaactcagatcgatggatgagttcaatacgttagtaaccagaccctttcgggtt 18402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 2814689 - 2814733
Alignment:
Q  36 gagagagatacaaagacttgggggacataaaacctgacccaggta 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2814689 gagagagatacaaagacttgggggacataaaacctgacccaggta 2814733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 543
Target Start/End: Complemental strand, 44136860 - 44136775
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtt 543  Q
    ||||||||||||||  ||||  ||||||||||||||| | |||||||| ||||||||||||| |||| |||| ||||||| |||||    
T  44136860 acgcgtaagaactcggatcgagggatgagtccaatacgtcagtaaccagaccctttcgggttgacatgaccagaccctttcgggtt 44136775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 1745485 - 1745422
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaa 521  Q
    ||||||||||||||| || |  ||||||||||||||| |||||||||| |||||||||||||||    
T  1745485 acgcgtaagaactcagattgagggatgagtccaatacgttagtaaccagaccctttcgggttaa 1745422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 27433415 - 27433332
Alignment:
Q  260 aatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgag 343  Q
    |||||||| |||| ||||||| |||||||||||||||||||| ||||||||| | ||  | |||| ||||| ||||||||||||    
T  27433415 aatggatcaactgtcaacacgatatcaaaatccaagtgccaaaaactccctgaacaaatccgcaagcataaaagctctttcgag 27433332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 303
Target Start/End: Original strand, 44206766 - 44206952
Alignment:
Q  117 aatggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaa-tatg 215  Q
    |||||||| ||||||||||||  |||||||     ||||||||| | ||||||||| ||||||  ||||||||| | |||||| |||||||| || ||||    
T  44206766 aatggatcgactctaatctattctaacaaaaagacactaatcacaggcgcaacccagcgaacccacgtacgggcacgaaaccaggttacaaaaaagtatg 44206865  T
Q  216 agaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaaca 303  Q
    | || | ||  | || | | ||||  |||| ||||| || ||||||||||||||| |||||||||||| | |||||||||||||||||    
T  44206866 aaaagtgaaaatctgtcgagaacaactagagtttaagaatggcgaatggatcgaccgccaacacggtaac-aaatccaagtgccaaca 44206952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 32338475 - 32338357
Alignment:
Q  184 tacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggta 283  Q
    |||| |||| ||||||||||||||| ||||||| || | ||| ||    || |||||||| | | |||||| ||||||||||| ||| ||||||| ||||    
T  32338475 tacgagcgcgaaaccaagttacaaaaaatatgaaaagtgaacattgcaaaagaacagttaaagtataaaaatggcgaatggattgaccgccaacatggta 32338376  T
Q  284 tcaaaatccaagtgccaac 302  Q
     ||||||||||||||||||    
T  32338375 acaaaatccaagtgccaac 32338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 44136959 - 44136898
Alignment:
Q  250 aaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||| ||||||||||| ||| |||||||||||| |||||||| |||||||||| |||||||    
T  44136959 aaaaaaggcgaatggattgaccgccaacacggtaacaaaatcctagtgccaacagctccctg 44136898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 2406488 - 2406539
Alignment:
Q  260 aatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| |||||||    
T  2406488 aatggatcgaccgccaacacggtatcaacatctaagtgccaacacctccctg 2406539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 22065881 - 22065827
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccct 310  Q
    ||||||||||||||| |||||||||||||||| ||||| || |||||||| ||||    
T  22065881 ggcgaatggatcgaccgccaacacggtatcaagatccacgtaccaacaaccccct 22065827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 29847728 - 29847817
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat 346  Q
    |||||||||||||||  ||||||||||||| |||||||||||||| || ||||||| | |   |||||| ||||| |||| ||||||||||    
T  29847728 ggcgaatggatcgaccaccaacacggtatc-aaatccaagtgccagcagctccctgaacacaccagcaagcataaaagctttttcgagcat 29847817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 41421371 - 41421421
Alignment:
Q  261 atggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||||||| |||||||||||| ||||||||| ||||||||| |||||||    
T  41421371 atggatcgaccgccaacacggtaacaaaatccacgtgccaacagctccctg 41421421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 41839640 - 41839702
Alignment:
Q  249 taaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||| | ||||||||||||| |||||||||||| ||||||||||||| ||| | |||||||    
T  41839640 taaaaatgacgaatggatcgaccgccaacacggtaacaaaatccaagtgtcaatagctccctg 41839702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 53813689 - 53813771
Alignment:
Q  126 actctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    ||||||||||||| |||||||  |  ||||||||| | ||||||||| |||| |||||||||||||| |||||| ||| ||||    
T  53813689 actctaatctatcctaacaaatatatactaatcactggcgcaacccagcgaatctgcgtacgggcgcgaaaccaggttgcaaa 53813771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 5383890 - 5383822
Alignment:
Q  242 tagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||| ||||| || ||||||||||||||| |||||||||||| | ||||||||||| ||||| |||||||    
T  5383890 tagagtttaagaatggcgaatggatcgaccgccaacacggtaac-aaatccaagtgtcaacagctccctg 5383822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 23096508 - 23096597
Alignment:
Q  259 gaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataa 348  Q
    |||||||||||| |||||||||||||||||||||| || ||| || | | ||| | || ||| ||  ||||| |||||||||||||||||    
T  23096508 gaatggatcgaccgccaacacggtatcaaaatccacgtaccagcatcccgctgaataaaacaacatgcataatagctctttcgagcataa 23096597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 3674379 - 3674431
Alignment:
Q  259 gaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||||| |||||||||||||| |||| ||||| ||||| |||||||    
T  3674379 gaatggatcgactaccaacacggtatcagaatcaaagtgtcaacagctccctg 3674431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 543
Target Start/End: Complemental strand, 25100428 - 25100345
Alignment:
Q  460 gcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtt 543  Q
    |||||| |||||| ||||  |||||||| |||||| | || ||||| |||||||||||||||   ||||| |||||||||||||    
T  25100428 gcgtaaaaactcagatcgagggatgagttcaatacgtcagcaaccagaccctttcgggttaattgaaccagacccttttgggtt 25100345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 10330053 - 10330011
Alignment:
Q  259 gaatggatcgactgccaacacggtatcaaaatccaagtgccaa 301  Q
    ||||||||||||| |||||||||||  ||||||||||||||||    
T  10330053 gaatggatcgactaccaacacggtaaaaaaatccaagtgccaa 10330011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 44311841 - 44311903
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggtta 520  Q
    ||||||||||||||| ||||   |||||||| |||||||||||||||| | ||||||| ||||    
T  44311841 acgcgtaagaactcagatcgagtgatgagtctaatacattagtaaccataacctttcgagtta 44311903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 23096289 - 23096334
Alignment:
Q  43 atacaaagacttgggggacataaaacctgacccaggtacaacccaa 88  Q
    ||||| ||||| |||||||||  |||||||||||||||||||||||    
T  23096289 atacagagactggggggacattgaacctgacccaggtacaacccaa 23096334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 25100654 - 25100573
Alignment:
Q  127 ctctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    |||||| ||||| |||||||  |  ||||||||| ||||||||||| | |||| |||||||||||| ||||||  |||||||    
T  25100654 ctctaaactatcctaacaaaaatatactaatcacagacgcaacccagcaaacccgcgtacgggcgcgaaaccagattacaaa 25100573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 60 - 588
Target Start/End: Complemental strand, 41566631 - 41566101
Alignment:
Q  60 acataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaacagacctaatggatccactctaatctatcataacaaagttcaactaatca 159  Q
    ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  41566631 acataaaacctgacccaggtacaacccaaaaggggatacatcgatgaaaacagacctaatgcatccactcttatctatcataacaaagtttaactaatca 41566532  T
Q  160 cggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaacggcg 259  Q
    ||||||||| ||| |||||| |||||||| ||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||| |     
T  41566531 cggacgcaatccagcgaacccgcgtacgg-cgcgaaaccaagttacaaaaaatatgagaagttaacttttgccaataacagttagagtttaaaaacgaca 41566433  T
Q  260 aatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat-aaataccag--t 356  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||||||  |    
T  41566432 aatggatcgaccgccaacacggtatcaaaatctaagtggcaacagctccctgcacaagacaacaagcataacagctctttcgagcattaaataccagagt 41566333  T
Q  357 gtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaaca 456  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||| | ||||||||||    
T  41566332 gtaggaatacaagacgacttgaaacctgcagacctcaacagacctgaaaacatcagagagtcaaagcagtcaagcaaccaaacacaatggaattcaaaca 41566233  T
Q  457 tacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtttataaaaccaaac 556  Q
    |||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||  ||||||||| ||||||||||||| |||||||||||| |||||    
T  41566232 tacgcgtaagaactcagatcgtgggatgagtctaatacgttagtaaccagacccttatgggttaacagaaccataccctttcgggtttataaaagcaaac 41566133  T
Q  557 cacatcaaaataggccaaaagtcttcgaccac 588  Q
    ||||||||||||||||||||||||||||||||    
T  41566132 cacatcaaaataggccaaaagtcttcgaccac 41566101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 210 - 588
Target Start/End: Original strand, 1029485 - 1029865
Alignment:
Q  210 aatatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccc 309  Q
    |||||||||| | ||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  1029485 aatatgagaagtaaacctttgccaataacacttagagtttaaaaacgtcgaatggatcgaccgccaacatggtatcaaaattcaagtgccaacaactccc 1029584  T
Q  310 tgcagaagacagcaaccataacagctctttcgagcat-aaataccag--tgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaa 406  Q
    |||| || |||| || ||||| ||||||||||||||| |||||||||  |||||  |||||| |||||||||||| |||||  || ||||||| | ||||    
T  1029585 tgcacaaaacagtaagcataatagctctttcgagcatcaaataccagagtgtagacatacaaaacgacttgaaacatgcaggtctcaacagacatgaaaa 1029684  T
Q  407 catcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaa 506  Q
    |||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||     
T  1029685 catcagagagtcgaagcagtcaagcagccaaacacaacgggattcaaacatacgcgtaagaactcagatcgtgggatgagtccaatacgttagtaa-cag 1029783  T
Q  507 accctttcgggttaacataaccatacccttttgggtttataaaaccaaaccacatcaaaataggccaaaagtcttcgaccac 588  Q
    ||||||||||||||| | ||||| ||||||  ||||||||| ||| ||||||| ||||||||||| |||||||||| |||||    
T  1029784 accctttcgggttaatagaaccagacccttccgggtttatagaacaaaaccacttcaaaataggctaaaagtcttcaaccac 1029865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 319 - 588
Target Start/End: Original strand, 11954462 - 11954725
Alignment:
Q  319 cagcaaccataacagctctttcgagcataa-atacca--gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagaga 415  Q
    |||||| ||||| ||||||||||||||| | ||||||  ||||||| | ||| || |||||||||||||||||  | |||| |||| |||||||||        
T  11954462 cagcaagcataaaagctctttcgagcatcatataccaaagtgtaggcagacacgaagacttgaaacctgcagatttcaacatacctaaaaacatca---- 11954557  T
Q  416 gtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcg 515  Q
        ||||||||| |  |||||| |||||| |||||||||| ||||||||||||||| |||   ||||||||||||||| ||| |||||| |||||||||    
T  11954558 ----aagcagtcatgtcaccaaacacaacggaattcaaacagacgcgtaagaactcagatccagggatgagtccaatacgttaataaccagaccctttcg 11954653  T
Q  516 ggttaacataaccatacccttttgggtttataaaaccaaaccacatcaaaataggccaaaagtcttcgaccac 588  Q
    |||||||  || || ||||||| || ||| | || ||||| |||||||||| ||| | ||||||||| |||||    
T  11954654 ggttaacggaatcacaccctttgggatttttgaagccaaatcacatcaaaagaggtc-aaagtcttcaaccac 11954725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 121 - 311
Target Start/End: Complemental strand, 18003918 - 18003728
Alignment:
Q  121 gatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaat 220  Q
    |||| ||||||||||||| |||||||  |   |||||||  | ||||||||| |||||| ||||||  |||| ||||||||||||||| ||||||| ||     
T  18003918 gatcaactctaatctatcctaacaaaaattccctaatcaaaggcgcaacccagcgaacccgcgtacatgcgcgaaaccaagttacaaaaaatatgaaaag 18003819  T
Q  221 ttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    | ||| | |||  | |||| ||||| ||||   | | | |||| |||||| |||||||||||| ||||||||||||||||||| |||||||    
T  18003818 tgaacgtctgcatagaacaattagagtttaggtatgacaaatgaatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctg 18003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 10659082 - 10659157
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||| ||||| | |||||| || ||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  10659082 aacaattagagtataaaaatggtgaatggatcgaccaccaacacggtaacaaaatccaagtgccaacaactccctg 10659157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 5949910 - 5949982
Alignment:
Q  126 actctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaacc 198  Q
    ||||||||||||| |||||||  |  ||||||||| ||||||||| | |||||| ||||||||||||||||||    
T  5949910 actctaatctatcctaacaaaaatacactaatcactgacgcaaccaagcgaacccgcgtacgggcgcaaaacc 5949982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 38731929 - 38731819
Alignment:
Q  367 aagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaag 466  Q
    ||||||||||||||||| || | || ||||||  | ||||||||| |||||||||| ||||| || |||||| ||||     |||||||| |||||||||    
T  38731929 aagacgacttgaaacctacaaatctcaacagatttgaaaacatcaaagagtcgaagaagtcatgccaccaaacacaattggtttcaaacaaacgcgtaag 38731830  T
Q  467 aactcatatcg 477  Q
    |||||| ||||    
T  38731829 aactcacatcg 38731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 8869692 - 8869866
Alignment:
Q  130 taatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaaccttt 229  Q
    ||||||||||||||||| ||  ||||| || |  ||||||||| |||||| || ||||||||| |||||| |||| |||    |||| || | ||| |||    
T  8869692 taatctatcataacaaaatttcactaaccatgagcgcaacccaacgaacccgcatacgggcgcgaaaccaggttaaaaa----atgaaaagtgaacattt 8869787  T
Q  230 gccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactcc 308  Q
    |  || |||| ||||  ||||||   || |||||||||||||| |||||  ||||||||||||||||| ||||| ||||    
T  8869788 gtgaagaacaattagggtttaaatctggtgaatggatcgactgtcaacatagtatcaaaatccaagtgtcaacagctcc 8869866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 33525411 - 33525465
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaat 290  Q
    |||||||||| |||||| | || |||||||||||| ||||||||| |||||||||    
T  33525411 aacagttagagtttaaatatggtgaatggatcgaccgccaacacgatatcaaaat 33525465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 14442519 - 14442560
Alignment:
Q  258 cgaatggatcgactgccaacacggtatcaaaatccaagtgcc 299  Q
    ||||||||| ||| |||||||||||| |||||||||||||||    
T  14442519 cgaatggattgaccgccaacacggtaacaaaatccaagtgcc 14442560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 14575295 - 14575340
Alignment:
Q  258 cgaatggatcgactgccaacacggtatcaaaatccaagtgccaaca 303  Q
    ||||||||||||| |||||||||| | ||| |||||||||||||||    
T  14575295 cgaatggatcgaccgccaacacggcaacaacatccaagtgccaaca 14575340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 36 - 429
Target Start/End: Complemental strand, 31946657 - 31946260
Alignment:
Q  36 gagagagatacaaagacttggggga-cataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaacagacctaatggatccactctaatc 134  Q
    |||||||||||||||||| |||||| |||||||||| || |||||||||||||||  || |||||||||| |||||||| ||||||||||||||||||||    
T  31946657 gagagagatacaaagactggggggaacataaaaccttactcaggtacaacccaaagggggatacatcgatgaaaacagatctaatggatccactctaatc 31946558  T
Q  135 tatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaa 234  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  31946557 tatcataacaaagtttaactaatcaaggacgcaacccagcgaacccgcgtacgggcgcgaaaccaagttacaaaaaatatgagaagttaacctttgccaa 31946458  T
Q  235 taacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagc 334  Q
    ||||| ||||| ||||| |||| ||||||||| | | |||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  31946457 taacaattagagtttaagaacgacgaatggattgcccgccaacacggtatcaaaatccaagtgccaacagctccctgcacaagacaacaagcataacagc 31946358  T
Q  335 tctttcgagcat-aaatacc--agtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaa 429  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||| ||||||||||    
T  31946357 tctttcgagcatcaaataccagagtgtaggaatacaagacgacttgaaacctgcaaacctcaacggacctgaaaacatcagagagtcaaagcagtcaa 31946260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 523
Target Start/End: Original strand, 3008661 - 3008906
Alignment:
Q  272 gccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataaa-taccagtgt--aggaatacaa 368  Q
    ||||||||  |||||||||||| ||||||||||||||||| | ||| |||||| ||||| ||||||||| ||||| || ||||| |||  ||| | ||||    
T  3008661 gccaacacactatcaaaatcca-gtgccaacaactccctgaacaag-cagcaagcataa-agctctttcaagcatgaagtaccaatgtgaaggcagacaa 3008757  T
Q  369 gacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaa 468  Q
     |||||||||||||| |||| || |||| | ||  |||||||| |||||||||| | ||| || |||||| ||||      ||||||||||| |||||||    
T  3008758 tacgacttgaaacctacagatctcaacaaatctggaaacatcatagagtcgaagaaatcaggccaccaaacacaa------tcaaacatacgtgtaagaa 3008851  T
Q  469 ctcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaaca 523  Q
    |||| |||| |||||||||| ||||| |||||||||| |||||||||||||||||    
T  3008852 ctcagatcgaaggatgagtctaatacgttagtaaccagaccctttcgggttaaca 3008906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 56 - 310
Target Start/End: Original strand, 592611 - 592864
Alignment:
Q  56 ggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaacagacctaatggatccactctaatctatcataacaaagttcaacta 155  Q
    ||||| ||||||| ||| |||| ||||||| |||  |  ||||||| ||||||||| |||||  | ||| ||  |||||||||||||||||  || ||||    
T  592611 ggggatataaaacttgatccagatacaacctaaatggttatacatccataaaaacaaacctagagaatcaaccataatctatcataacaaaaatccacta 592710  T
Q  156 atcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaac 255  Q
    ||||||||||||||| | ||||||||  || | |||| |||||| |||||||| |||| ||||| | ||||||| ||||||||||||| | | |||||||    
T  592711 atcacggacgcaacctagcgaacctgtataggagcgcgaaaccaggttacaaa-aatacgagaagtaaacctttaccaataacagttaaagtataaaaac 592809  T
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccct 310  Q
    ||  |||  ||||||  ||||||| ||||||||||| || | |||||||| ||||    
T  592810 ggtaaatcaatcgaccaccaacacagtatcaaaatctaaataccaacaaccccct 592864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 256 - 443
Target Start/End: Complemental strand, 15563753 - 15563566
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat-aaatacca 354  Q
    |||||||||||||||  ||||||| |||||||||| ||||||  |||| ||||||  | || ||||||| ||||| ||||||||||||||| |||||| |    
T  15563753 ggcgaatggatcgaccaccaacacagtatcaaaattcaagtgtgaacagctccctaaa-aatacagcaaacataaaagctctttcgagcatcaaatacta 15563655  T
Q  355 gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaa 443  Q
    ||||| || ||| |||||||| ||||| |||| | || |||||| ||  |||||||||||||||  || |||||||| |||||| ||||    
T  15563654 gtgtaagactactagacgactagaaacttgcaaatctcaacagatctagaaacatcagagagtccgagtagtcaagctaccaaatacaa 15563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 30625580 - 30625669
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat 346  Q
    ||||||||||||||| |||||||||||| |||||| |||||| |||| ||||||| || || ||| ||| ||||| |||||||||||||||    
T  30625580 ggcgaatggatcgaccgccaacacggtaacaaaattcaagtgtcaactactccctaca-aatacatcaaacataaaagctctttcgagcat 30625669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 6189901 - 6189847
Alignment:
Q  257 gcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||    
T  6189901 gcgaatggatcgaccgccaacacggaatcaaaattcaagtaccaacaactccctg 6189847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 549
Target Start/End: Complemental strand, 8210060 - 8209969
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtttataaa 549  Q
    ||||||||||||||| ||||  ||||||||||||||  |||||||||| | |||| |||||||  | ||||| |||||| ||||||| ||||    
T  8210060 acgcgtaagaactcagatcgagggatgagtccaataagttagtaaccagaaccttccgggttagaagaaccagacccttgtgggtttttaaa 8209969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 17458975 - 17459024
Alignment:
Q  248 ttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtg 297  Q
    |||||| |||||||| ||| ||||||||||||||||||||||| ||||||    
T  17458975 ttaaaatcggcgaattgattgactgccaacacggtatcaaaattcaagtg 17459024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 32718098 - 32718182
Alignment:
Q  261 atggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat 346  Q
    |||||||||| |||||||||||| || |||| | ||||||||| || |||| | ||| |||||| ||||| |||||||||||||||    
T  32718098 atggatcgaccgccaacacggtaacataatctacgtgccaacagcttcctgaacaag-cagcaaacataagagctctttcgagcat 32718182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 6257567 - 6257419
Alignment:
Q  164 cgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaac-aatatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaat 262  Q
    ||||||||| |||||| ||||||||| || |||||||||||||||  ||||||| || | ||  | ||   | ||||  |||| |||| ||| || || |    
T  6257567 cgcaacccagcgaacccgcgtacgggtgcgaaaccaagttacaaaataatatgaaaagtgaatatatgaatagaacatctagagtttataaatggtgagt 6257468  T
Q  263 ggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||||   ||||||||||||||||||||||||| ||||| |||||||    
T  6257467 ggatcgatcaccaacacggtatcaaaatccaagtgtcaacagctccctg 6257419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 501
Target Start/End: Original strand, 3709550 - 3709593
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagta 501  Q
    |||||||||||||||||| || ||||||||||||||| ||||||    
T  3709550 acgcgtaagaactcatattgtgggatgagtccaatacgttagta 3709593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 6190008 - 6189953
Alignment:
Q  153 ctaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    ||||||||| |||||||| | |||||||| |||||| ||| |||||||||||||||    
T  6190008 ctaatcacgaacgcaacctagcgaacctgagtacggtcgcgaaaccaagttacaaa 6189953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 521
Target Start/End: Complemental strand, 29032744 - 29032685
Alignment:
Q  462 gtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaa 521  Q
    ||||||||||| ||||  ||||||||||||||| |||||||||| ||| ||| |||||||    
T  29032744 gtaagaactcagatcgagggatgagtccaatacgttagtaaccagaccattttgggttaa 29032685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 521
Target Start/End: Complemental strand, 31304075 - 31304016
Alignment:
Q  462 gtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaa 521  Q
    ||||||||||| ||||  |||||||| |||||| | |||||||| |||||||||||||||    
T  31304075 gtaagaactcagatcgagggatgagttcaatacgtcagtaaccagaccctttcgggttaa 31304016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 30892143 - 30892225
Alignment:
Q  126 actctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    ||||||||||||| |||||||  |  |||||  || | ||||||||| |||||| ||||||||||||||||| | ||||||||    
T  30892143 actctaatctatcctaacaaaaatacactaactactggcgcaacccagcgaacccgcgtacgggcgcaaaactaggttacaaa 30892225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 29032957 - 29032896
Alignment:
Q  247 tttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactcc 308  Q
    |||||||  |||||||| ||| |||||||| ||  ||||||||| |||||||||||||||||    
T  29032957 tttaaaactggcgaatgaatcaactgccaagacaatatcaaaattcaagtgccaacaactcc 29032896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 1717512 - 1717572
Alignment:
Q  156 atcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatga 216  Q
    ||||| ||||||||||| ||| || |||||||| | | ||||||||||||||| |||||||    
T  1717512 atcacagacgcaacccagcgatcccgcgtacggactcgaaaccaagttacaaaaaatatga 1717572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 6257287 - 6257243
Alignment:
Q  449 ttcaaacatacgcgtaagaactcatatcgtaggatgagtccaata 493  Q
    |||||||| ||||||||||||||| ||||  ||||||||||||||    
T  6257287 ttcaaacaaacgcgtaagaactcagatcgagggatgagtccaata 6257243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 95 - 588
Target Start/End: Complemental strand, 48563670 - 48563174
Alignment:
Q  95 atacatcgataaaaacagacctaatggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaa 194  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||||| | |  ||||||||| |  |||||||| ||||||  | ||||||||| |    
T  48563670 atacatcgataaaaacagacctagtggatcaactataatctatcataacaacgattcactaatcacaggtgcaacccaacgaacccacatacgggcgcga 48563571  T
Q  195 aaccaagttacaaacaa-tatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatcca 293  Q
    ||  | |||| ||| || |||||||| | ||| ||||||||||||| ||||| ||||||| |||||||||||||||  | |||||  |||||||||| ||    
T  48563570 aattaggttaaaaaaaaatatgagaagtaaacatttgccaataacacttagagtttaaaa-cggcgaatggatcgatcgtcaacatagtatcaaaattca 48563472  T
Q  294 agtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat-aaataccag--tgtaggaatacaagacgacttgaaacctgcagacc 390  Q
    |||||||||||||||||| | || ||| ||| ||||| ||||||||||||||| |||||||||  |||||| |||||||||||||||||||||||||| |    
T  48563471 agtgccaacaactccctgaacaaaacaacaagcataatagctctttcgagcatcaaataccagactgtaggcatacaagacgacttgaaacctgcagatc 48563372  T
Q  391 ttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtcca 490  Q
    | |||||||||  ||||| ||||||||| ||| ||||||||||||||| ||||| | ||||||||||||||||||||||| | ||||| |||||||||||    
T  48563371 tcaacagacctggaaacaacagagagtcaaagtagtcaagcaaccaaacacaactagattcaaacatacgcgtaagaacttagatcgtgggatgagtcca 48563272  T
Q  491 atacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtttataaaaccaaaccacatcaaaataggccaaaagtcttcgaccac 588  Q
    |||  |||||||||| |||||||| |||||| | |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48563271 atatgttagtaaccagaccctttcaggttaatagaaccataccctttcaggtttataaaaccaaaccacatcaaactaggccaaaagtcttcgaccac 48563174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 319 - 588
Target Start/End: Complemental strand, 52149013 - 52148736
Alignment:
Q  319 cagcaaccataacagctctttcgagcat-aaataccag--tgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagaga 415  Q
    |||||| || || ||||||||||||||| |||||||||  |||||  | |||||| ||||||||||||||||  || || |||| |  ||||||||||||    
T  52149013 cagcaagcaaaaaagctctttcgagcatcaaataccagagtgtagctagacaagatgacttgaaacctgcaggtctcaatagacatggaaacatcagaga 52148914  T
Q  416 gtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaacca----aaccct 511  Q
    | ||||||||||| || |||||| |||| ||  ||||||||||||| |||||||||| ||||  ||| || |||||||| ||| |||  |    ||||||    
T  52148913 ggcgaagcagtcaggccaccaaacacaatgacgttcaaacatacgcttaagaactcagatcgagggacgattccaatacgttattaattagcgcaaccct 52148814  T
Q  512 ttcgggttaacataaccatacccttttgggtttataaaaccaaaccacatc-aaaataggccaaaagtcttcgaccac 588  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||||||||| |||| ||||||||||||||| |||||    
T  52148813 ttcgggttaacataaccatacccttttaggtttttgaaatcaaaccacatcaaaaagaggccaaaagtcttcaaccac 52148736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 41 - 208
Target Start/End: Original strand, 18650134 - 18650301
Alignment:
Q  41 agatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaa-cagacctaatggatccactctaatctatca 139  Q
    ||||||||||||| ||||||||||  ||||||||| || | ||| ||||  | |||||||||  ||||| ||| || | |||||||||||||| |||||     
T  18650134 agatacaaagactggggggacataggacctgacccgggaa-aactcaaacggaaatacatcgtgaaaaatcagtccaagtggatccactctaacctatcc 18650232  T
Q  140 taacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    |||||||  || ||||||||| |||||||| || |||||| |||||||||||| |||||||||||||||    
T  18650233 taacaaaaatccactaatcacagacgcaactcagcgaacccgcgtacgggcgcgaaaccaagttacaaa 18650301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 15309279 - 15309133
Alignment:
Q  163 acgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaat 262  Q
    ||||||| || ||||||||| ||| ||| | ||||||||||||||| || || |  | | ||| ||||| || |||||||||| |||||||  |||||||    
T  15309279 acgcaactcagcgaacctgcttacaggcacgaaaccaagttacaaaaaacataaagagtgaacgtttgcaaaaaacagttagagtttaaaat-ggcgaat 15309181  T
Q  263 ggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||||| |||||||||||| ||||||||||| |||||||||||||||    
T  15309180 ggatcgaccgccaacacggta-caaaatccaagcgccaacaactccctg 15309133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 18628737 - 18628930
Alignment:
Q  119 tggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaata-tgag 217  Q
    |||||| ||||| ||||||| |||||||  |  ||||||||||| ||||||| | |||||| |||||||||||| |||||| |||||||| || | |||     
T  18628737 tggatctactcttatctatcctaacaaaaattcactaatcacgggcgcaacctagcgaacccgcgtacgggcgcgaaaccaggttacaaaaaagaatgaa 18628836  T
Q  218 aatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    || | ||| | | |  | |||| ||||| | | |  | ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||    
T  18628837 aagtgaacatctacatagaacatttagagtgtgattatggcgaatggatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctg 18628930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 335
Target Start/End: Original strand, 14167631 - 14167845
Alignment:
Q  110 cagacctaatggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaac 209  Q
    |||||||| ||||||||| |||||||||||||||||| ||  | ||||||| | ||||||| | |||||||| ||| | |||| |||||||||||||||     
T  14167631 cagacctagtggatccaccctaatctatcataacaaaatttcattaatcacaggcgcaacctagcgaacctgtgtatgcgcgcgaaaccaagttacaaaa 14167730  T
Q  210 aatatgagaatttaacctttgccaataacagttagaatttaaa-aacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactcc 308  Q
    |||           | | |||| || |||| ||||  ||||||   |||| ||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  14167731 aat-----------aacattgcgaagaacaattagggtttaaagttcggcaaatggatcgaccgctaacacggtatc-aaatccaagtgccaacaactcc 14167818  T
Q  309 ctgcagaagacagcaaccataacagct 335  Q
    ||| | || ||||||| ||||| ||||    
T  14167819 ctgaataatacagcaagcataaaagct 14167845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 11871567 - 11871512
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  11871567 ggcgaatggatcgaccgctaacacggtaacaaaatccaagtgccaacaactccctg 11871512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 26759522 - 26759458
Alignment:
Q  247 tttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||| | ||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||    
T  26759522 tttaaatatggcgaatggatcgaccgccaacacagtaacaaaatccaagtgccaacagctccctg 26759458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 23777180 - 23777126
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||    
T  23777180 ggcgaatggatcgaccgccaacacggta-caaaatccaagtgccaacagctccctg 23777126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 42241525 - 42241478
Alignment:
Q  264 gatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  42241525 gatcgaccgccaacacggtaacaaaatccaagtgccaacaactccctg 42241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 26925005 - 26925070
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaa 301  Q
    |||||| ||| |||||| | ||||||||||||||| |||||||| ||| |||||||||||||||||    
T  26925005 aacagtaagagtttaaatatggcgaatggatcgaccgccaacacagtaacaaaatccaagtgccaa 26925070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 2688245 - 2688330
Alignment:
Q  257 gcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca 345  Q
    |||||||||| ||| |||||||||||| |||| |||||| ||||||||||||||||| ||| |||||| ||||| ||||||||| ||||    
T  2688245 gcgaatggattgaccgccaacacggtaacaaa-tccaagcgccaacaactccctgcacaag-cagcaagcataa-agctctttctagca 2688330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 26925118 - 26925174
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttc 514  Q
    ||||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||    
T  26925118 acgcgtaagaactcagatcgagggatgagtccaatacatcagtaaccataccctttc 26925174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 555
Target Start/End: Original strand, 2688447 - 2688547
Alignment:
Q  460 gcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaa----accctttcggg-ttaacataaccatacccttttgggtttataaaaccaa 554  Q
    |||| |||||||| ||||| ||||||||||||||| |||||||||||    || |||||||| |||||  ||||| ||||||| |||||||| |||||||    
T  2688447 gcgttagaactcagatcgtgggatgagtccaatacgttagtaaccaaacagactctttcgggtttaacgaaaccagaccctttcgggtttatgaaaccaa 2688546  T
Q  555 a 555  Q
    |    
T  2688547 a 2688547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 23777090 - 23777027
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaa 521  Q
    ||||||| ||||||| ||||  ||||||||||||||||| ||| ||||||| ||||||||||||    
T  23777090 acgcgtaggaactcagatcgagggatgagtccaatacatcagtgaccaaacactttcgggttaa 23777027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 33324039 - 33323984
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||||||| |||||||| ||| | ||||||||||||||||| |||||||    
T  33324039 ggcgaatggatcgaccgccaacacagtaacgaaatccaagtgccaacagctccctg 33323984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 519
Target Start/End: Complemental strand, 15394687 - 15394629
Alignment:
Q  461 cgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggtt 519  Q
    |||||||||||| ||||  ||||| |||||||||||||||||||| | |||||||||||    
T  15394687 cgtaagaactcagatcgagggatgcgtccaatacattagtaaccagatcctttcgggtt 15394629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 26762537 - 26762455
Alignment:
Q  126 actctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    ||||||||||||| |||||||  |  ||||||||| | ||||||||| |||||| |||||||||||| ||||||  |||||||    
T  26762537 actctaatctatcctaacaaaaatacactaatcactggcgcaacccagcgaaccagcgtacgggcgcgaaaccagattacaaa 26762455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 25023301 - 25023350
Alignment:
Q  258 cgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactc 307  Q
    |||||| |||||| ||||| | ||||||||||||||||||||||||||||    
T  25023301 cgaatgaatcgaccgccaatatggtatcaaaatccaagtgccaacaactc 25023350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 519
Target Start/End: Original strand, 50959523 - 50959584
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggtt 519  Q
    ||||||||||||||| ||||  ||||||||||||||| | |||||||| |||||||| ||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaaccagaccctttctggtt 50959584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 311
Target Start/End: Complemental strand, 14393406 - 14393246
Alignment:
Q  152 actaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaata-tgagaatttaacctttgccaataacagttagaattta 250  Q
    ||||||||| | ||||||||| |||||  ||||||| |||  |||| | |||||||| || | ||| || | ||| ||| | || |||||||||| | ||    
T  14393406 actaatcacaggcgcaacccaacgaactcgcgtacgtgcgtgaaacaaggttacaaaaaagaatgaaaagtgaacatttacaaagaacagttagagtgta 14393307  T
Q  251 aaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    || | ||| ||||||| |||||| ||||||| | ||||||||||| ||||||| |||||||    
T  14393306 aatatggcaaatggattgactgcaaacacgggaacaaaatccaagcgccaacagctccctg 14393246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 534
Target Start/End: Original strand, 25023482 - 25023562
Alignment:
Q  454 acatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccataccc 534  Q
    |||||||||||| |||||| || |  |||||| |||||||| | |||||||||||||||||  ||||||| ||||| ||||    
T  25023482 acatacgcgtaaaaactcaaattgagggatgaatccaatacgtcagtaaccaaaccctttctagttaacaaaaccaaaccc 25023562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 33323945 - 33323885
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggt 518  Q
    ||||||||||||||| ||||  ||||||||||||||| | | |||||| ||||||||||||    
T  33323945 acgcgtaagaactcagatcgagggatgagtccaatacgtcattaaccataccctttcgggt 33323885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 536
Target Start/End: Complemental strand, 16256520 - 16256445
Alignment:
Q  461 cgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccataccctt 536  Q
    |||||||||||| ||||  ||||||||||||||| | || || || ||||||||||||||| | ||||| ||||||    
T  16256520 cgtaagaactcagatcgagggatgagtccaatacgtcagcaaacagaccctttcgggttaaaagaaccagaccctt 16256445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 16256635 - 16256561
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||| ||||| |||||| | |||||||||||||||  ||||||||||  |||||| |||||||||||| |||||||    
T  16256635 aacaattagagtttaaatatggcgaatggatcgacaaccaacacggtgacaaaat-caagtgccaacagctccctg 16256561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 536
Target Start/End: Original strand, 27901223 - 27901298
Alignment:
Q  461 cgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccataccctt 536  Q
    |||||||||||  ||||  |||||||||||||| ||||| || || ||||||||||||||| | ||||| ||||||    
T  27901223 cgtaagaactctgatcgagggatgagtccaatatattagcaaacagaccctttcgggttaaaagaaccagaccctt 27901298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 546
Target Start/End: Complemental strand, 19757796 - 19757718
Alignment:
Q  468 actcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtttat 546  Q
    ||||| ||||| ||||||||||||||| |||| ||| | |||||||||||||||   ||||| ||||||| | ||||||    
T  19757796 actcagatcgtgggatgagtccaatacgttaggaactagaccctttcgggttaaacaaaccaaaccctttcgagtttat 19757718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 2688022 - 2688071
Alignment:
Q  39 agagatacaaagacttgggggacataaaacctgacccaggtacaacccaa 88  Q
    ||||||||| ||||| |||| ||||||||||| ||||||||| |||||||    
T  2688022 agagatacagagactgggggaacataaaacctaacccaggtaaaacccaa 2688071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 18628967 - 18629023
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttc 514  Q
    ||||||||||||||| || |  ||||||||||||||| | |||||||| ||||||||    
T  18628967 acgcgtaagaactcagattgagggatgagtccaatacgtcagtaaccagaccctttc 18629023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 544
Target Start/End: Original strand, 18650445 - 18650529
Alignment:
Q  460 gcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggttt 544  Q
    ||||||||||| | |||   ||||||||||||||| | |||||||| |||||| ||||||||   ||||| ||||||| ||||||    
T  18650445 gcgtaagaactaagatcaagggatgagtccaatacgtcagtaaccatacccttccgggttaaacgaaccacaccctttcgggttt 18650529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 36 - 575
Target Start/End: Complemental strand, 28003113 - 28002574
Alignment:
Q  36 gagagagatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaacagacctaatggatccactctaatct 135  Q
    ||||||||| ||||||  | |||||||| |||| || |||||||||||||||||  || ||||| || || |||||||||||||| ||| || |||||||    
T  28003113 gagagagatgcaaaga--tcggggacattaaacatgtcccaggtacaacccaaatggggatacaacgttataaacagacctaatgaatctaccctaatct 28003016  T
Q  136 atcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaat 235  Q
    |||||||||||  || ||||||||||||||||||| | |||||| ||||||||||||||||| | |||||||| |||||||||| | |||||||| ||||    
T  28003015 atcataacaaaaatccactaatcacggacgcaacctagcgaacccgcgtacgggcgcaaaactatgttacaaaaaatatgagaagtaaacctttgtcaat 28002916  T
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagct 335  Q
    || ||||||  ||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||   ||||||| | ||  |||||| ||||| ||||    
T  28002915 aatagttagggtttgaaaacggcgaatggattgaccgccaacacggtatcaaaatctaagtgccaag--ctccctgaacaaagcagcaagcataaaagct 28002818  T
Q  336 ctttcgagcataaatacc---agtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagca 432  Q
    |||||||||||||| | |   |||||| | | ||| ||| |||||||||||||||| || |||| || | |||||||||||||||||||| ||||| ||     
T  28002817 ctttcgagcataaaaaaccaaagtgtatgcagacacgacaacttgaaacctgcagatctcaacatacttgaaaacatcagagagtcgaagtagtcaggcc 28002718  T
Q  433 accaaagacaacgaaattcaaacatac-gcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccata 531  Q
    |||||| ||||||| ||||||||| ||  |||||||||||| ||||  |||||||| |||||| ||| |||||| |||||||| | ||| || |  ||||    
T  28002717 accaaacacaacgagattcaaacagacatcgtaagaactcagatcgagggatgagttcaatacgttaataaccagaccctttcagattagcagagtcata 28002618  T
Q  532 cccttttgggtttataaaaccaaaccacatcaaaataggccaaa 575  Q
    ||||||  ||||| | ||||||| ||||||||||| ||||||||    
T  28002617 ccctttcaggtttttgaaaccaatccacatcaaaagaggccaaa 28002574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 36 - 537
Target Start/End: Complemental strand, 16994948 - 16994449
Alignment:
Q  36 gagagagatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgata---aaaacagacctaatggatccactctaa 132  Q
    ||||||||||||| |||| | |||| || ||||||| | ||| |||||| ||||| ||| ||||||||||   ||||||||| || |||||| ||  |||    
T  16994948 gagagagatacaaggact-gtgggatatgaaacctgcctcagctacaacacaaaaagga-tacatcgatataaaaaacagacttagtggatcaaccttaa 16994851  T
Q  133 tctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgcc 232  Q
    ||||||||||||||  || || ||| |||| | ||| |||  ||||| |||||| || |  |||||  |||||||| |||||||||| | ||||| ||||    
T  16994850 tctatcataacaaaaatctacaaattacgg-cacaatccagagaacccgcgtacaggtgggaaaccttgttacaaaaaatatgagaagtaaacctctgcc 16994752  T
Q  233 aataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataaca 332  Q
    |||||||  | | | |||||||||||||||| |||||| ||||||||      ||||| ||||||||||||||||| || | ||  || ||| ||||| |    
T  16994751 aataacatgttggacttaaaaacggcgaatgaatcgaccgccaacaca-----aaaatacaagtgccaacaactccatgaacaaagcaacaagcataaaa 16994657  T
Q  333 gctctttcgagcat-aaataccag--tgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaa 429  Q
    ||||||| |||||| |||||||||  |||||| | |||||||||||||||| ||||||| || |||| |||| ||||||||||||| | ||||||||||     
T  16994656 gctcttttgagcatcaaataccagagtgtaggcagacaagacgacttgaaatctgcagatctcaacaaacctgaaaacatcagagaattgaagcagtcag 16994557  T
Q  430 gcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataacca 529  Q
    || |||||| ||||| | |||||||||||| |||||||||||| |||   ||| |||||||||| | |||||| || ||||||||||||||||| || ||    
T  16994556 gccaccaaacacaacaagattcaaacatacacgtaagaactcagatcaagggacgagtccaataaactagtaatcagaccctttcgggttaacaaaatca 16994457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 256 - 544
Target Start/End: Complemental strand, 10623599 - 10623314
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat-aaatacca 354  Q
    |||||||||||||||||||||||| || ||||||| ||| |||||||||||||||| | ||  |||||| ||| | ||||||||||||||| ||||||||    
T  10623599 ggcgaatggatcgactgccaacacagtgtcaaaatacaattgccaacaactccctgaacaaagcagcaagcatga-agctctttcgagcatgaaatacca 10623501  T
Q  355 --gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattca 452  Q
      ||| ||| | ||||||| |||||||||||||||| || |||| | ||  ||||||||||||||| ||| ||| |  | |||||| ||     ||||||    
T  10623500 atgtgcaggcagacaagacaacttgaaacctgcagatctcaacaaatctggaaacatcagagagtcaaagaagttagaccaccaaacac-----aattca 10623406  T
Q  453 aacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggttt 544  Q
    |||| | |||| |||||||| ||||  ||||||||||||||| |||||||||||||||| ||||||||| | ||||| ||| ||| ||||||    
T  10623405 aacaaatgcgttagaactcagatcgagggatgagtccaatacgttagtaaccaaaccctatcgggttaatagaaccagaccttttcgggttt 10623314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 67 - 560
Target Start/End: Original strand, 27899946 - 27900441
Alignment:
Q  67 acctgacccaggtacaacccaaaacggaatacatcgataaaaac-agacctaatggatccactctaatctatcat-aacaaagttcaactaatcacggac 164  Q
    |||| ||||||||||||| ||||| |||||||| ||||| |||  ||||||| ||||||||| ||| |||||| | || ||| ||||  | ||||||| |    
T  27899946 acctaacccaggtacaactcaaaagggaatacaacgatataaattagacctagtggatccaccctattctatctttaaaaaacttcat-tgatcacgggc 27900044  T
Q  165 gcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatgg 264  Q
    |||| ||| | |||| ||||||||| || ||||||||||||||| ||||| | |||| ||| ||||| || |   || ||  || ||   | ||||||||    
T  27900045 gcaatccagcaaacccgcgtacgggagcgaaaccaagttacaaaaaatattaaaattaaacatttgcaaaaa---gtcagggttcaatttcagcgaatgg 27900141  T
Q  265 atcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataaa-taccag--tgtagg 361  Q
    ||| || | ||||||||||  |||||| ||||||| ||| ||||||  |  |  |||||| |||||  |||||   ||||| ||| ||||||  ||||||    
T  27900142 atcaaccgacaacacggtaa-aaaatctaagtgccgacagctccctaaatcaagcagcaagcataaaggctctcgagagcacaaagtaccagagtgtagg 27900240  T
Q  362 aatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgc 461  Q
      ||||||||||||||||||||||| || | |||| |  | |||| ||||||||||||||| ||||| || |||||| ||| |    ||||||||||||     
T  27900241 cgtacaagacgacttgaaacctgcaaacttcaacaaatttgaaaatatcagagagtcgaagtagtcaggccaccaaacacagcaggtttcaaacatacgt 27900340  T
Q  462 gtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcggg--ttaacataaccatacccttttgggtttataaaaccaaaccac 559  Q
    ||||||||||| ||||  ||||||||||||||  |||||||||| |||||||||||  ||||||||| |||||||||| |||||| | ||||| ||||||    
T  27900341 gtaagaactcagatcgagggatgagtccaatatgttagtaaccagaccctttcgggttttaacataaacataccctttcgggtttttgaaaccgaaccac 27900440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 119 - 345
Target Start/End: Original strand, 20118030 - 20118254
Alignment:
Q  119 tggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaata-tgag 217  Q
    |||||| ||||||||||||| |||||||  |  ||||||||  | |||||| |  |||||| |||||||||||| |||||||| |||||| || | |||     
T  20118030 tggatcaactctaatctatcctaacaaaaattcactaatcataggcgcaactcggcgaacccgcgtacgggcgcgaaaccaagctacaaaaaagaatgaa 20118129  T
Q  218 aatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaag 317  Q
    || | ||| ||   ||| |||||||||| | |||||| | ||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||  ||      
T  20118130 aagtgaac-ttccacaagaacagttagattataaaaatgacgaatagatcgaccgccaatacggtaacaaaatccaagtgccaacaactccctgatga-- 20118226  T
Q  318 acagcaaccataacagctctttcgagca 345  Q
    ||||||| |||||  |||||||||||||    
T  20118227 acagcaagcataaatgctctttcgagca 20118254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 24957340 - 24957508
Alignment:
Q  39 agagatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaac-agacctaatggatccactctaatctat 137  Q
    |||||||||| |||| |||| |||| | |||| |||||||||||||| |||  || ||||| | ||| |||| ||||||| ||||||||| |||||||||    
T  24957340 agagatacaatgactcgggg-acattagacct-acccaggtacaacctaaatagggatacaacaatataaaccagacctagtggatccaccctaatctat 24957437  T
Q  138 cataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    | |||||||  |  | |||||| || ||||| ||| ||||| ||||||||||||| |||||||||||||||    
T  24957438 cttaacaaaaattcattaatcatgggcgcaatccagcgaacttgcgtacgggcgcgaaaccaagttacaaa 24957508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 556
Target Start/End: Original strand, 10019739 - 10019849
Alignment:
Q  448 attcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaacca--aaccctttcgggttaacataaccatacccttttgggttta 545  Q
    |||||| || ||||||||||||||| ||||  ||||||||||||||| ||||||||||   ||||||| ||||||| | ||| | ||||||| || |||     
T  10019739 attcaatcagacgcgtaagaactcaaatcgagggatgagtccaatacgttagtaaccacggacccttttgggttaatagaactagaccctttcggatttt 10019838  T
Q  546 taaaaccaaac 556  Q
    | |||||||||    
T  10019839 tgaaaccaaac 10019849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 451 - 543
Target Start/End: Original strand, 20118253 - 20118343
Alignment:
Q  451 caaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtt 543  Q
    ||||| ||| |||||||||||||||||  ||||||||||||||| | || ||||  |||||||||||||||   ||||| ||||||| |||||    
T  20118253 caaacctacacgtaagaactcatatcgagggatgagtccaatacgtcagcaacc--accctttcgggttaaacgaaccagaccctttcgggtt 20118343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 31727444 - 31727519
Alignment:
Q  117 aatggatccactctaatctatcataac-aaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgc 192  Q
    ||||| || ||||||||||||| |||| ||||||| ||||||||| |||||||| || |||||| ||||||||||||    
T  31727444 aatgggtctactctaatctatcctaacaaaagttc-actaatcacagacgcaactcagcgaacccgcgtacgggcgc 31727519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 9957348 - 9957295
Alignment:
Q  258 cgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||| | |||||||    
T  9957348 cgaatggatcgaccaccaacacggtaacaaaatccaagtgtcaatagctccctg 9957295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 24957549 - 24957640
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccat--aacagctctttcgagcat 346  Q
    |||||||||||||||  |||||||| |||| ||||| ||||||||||| ||||||| | || ||| ||| |||  || |||||||||||||||    
T  24957549 ggcgaatggatcgaccaccaacacgttatc-aaatctaagtgccaacagctccctgaacaatacaacaagcataaaaaagctctttcgagcat 24957640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 5907165 - 5907101
Alignment:
Q  247 tttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||||| | ||| |||| ||||||  ||||||||||| ||||||||||||||||| | |||||||    
T  5907165 tttaaatatggcaaatgaatcgaccaccaacacggtaacaaaatccaagtgccaatagctccctg 5907101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 37 - 588
Target Start/End: Original strand, 35739758 - 35740313
Alignment:
Q  37 agagagatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgata-aaaacagacctaatggatccactctaatct 135  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  || ||||| | ||| |||| ||||| |||||||| || |||||||    
T  35739758 agagagatacaaagact-gggggacataaaacctgacccaggtacaacccaaatggggatacaacaatataaaatagacccaatggatctaccctaatct 35739856  T
Q  136 atcataac---aaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaa-tatgagaatttaacctttgc 231  Q
    |||||||    ||| |||| |||||||||||||||||||| ||| || |||||||||  | ||||||  ||||||| || |||||||| | |||||||||    
T  35739857 atcataaacaaaaaattca-ctaatcacggacgcaacccagcgagcccgcgtacgggtacgaaaccagattacaaaaaaatatgagaagtaaacctttgc 35739955  T
Q  232 caataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataac 331  Q
    |||||| ||||||  ||| ||||||||| |||||| ||| ||||||||  ||||||||||||||||||||   ||||||| | ||  || ||| |||||     
T  35739956 caataatagttagggtttgaaaacggcgtatggattgaccgccaacacattatcaaaatccaagtgccaag--ctccctgaacaaagcaacaagcataaa 35740053  T
Q  332 agctctttcgagcat-aaatacca--gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtca 428  Q
    ||||||||||||||| ||||||||  ||||||| | ||  |||||||||||||||||| | || ||||||||| |||||||||| || |||||||| |||    
T  35740054 agctctttcgagcatcaaataccaaagtgtaggcagacgcgacgacttgaaacctgcaaatctcaacagacctgaaaacatcagtgattcgaagcaatca 35740153  T
Q  429 agcaaccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataacc 528  Q
     || |||||| |||||| ||| | |||| | || |||||||||| ||||  ||| ||||||||||| ||| || | | ||||||||||| ||||| ||||    
T  35740154 ggccaccaaacacaacggaatgcgaacagatgcataagaactcagatcgagggacgagtccaatacgttaatagctagaccctttcgggctaacagaacc 35740253  T
Q  529 atacccttttgggtttataaaaccaaaccacatcaaaataggccaaaagtcttcgaccac 588  Q
    || |||||| |||||| | |||||||| |||||||||| | | | ||||||||| |||||    
T  35740254 attccctttcgggtttttgaaaccaaatcacatcaaaacaaggccaaagtcttcaaccac 35740313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 449 - 587
Target Start/End: Complemental strand, 7903530 - 7903391
Alignment:
Q  449 ttcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtttataa 548  Q
    |||||||||| ||||||||||||| ||||  | ||||  ||||||| ||||||| |||||||||||||||||||| ||||||| | |||   |||| | |    
T  7903530 ttcaaacatatgcgtaagaactcaaatcgaggaatgaccccaatacgttagtaatcaaaccctttcgggttaacagaaccatatcttttcaagtttttga 7903431  T
Q  549 aaccaaaccacatca-aaataggccaaaagtcttcgacca 587  Q
    ||||||||||||||| ||| ||||||||||||||| ||||    
T  7903430 aaccaaaccacatcataaagaggccaaaagtcttcaacca 7903391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 5450244 - 5450306
Alignment:
Q  152 actaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatat 214  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||| ||||||| |||||    
T  5450244 actaatcacggacgcaacccagtgagcctgcgtacgggcgcaaaaccaaattacaaaaaatat 5450306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 28421508 - 28421307
Alignment:
Q  106 aaaacagacctaatggatccactctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttac 205  Q
    ||||||| || | |||||| |||||||||||||||||||||  |  |||||||||    |||| ||| |||||  |||||||||||| ||||||  ||||    
T  28421508 aaaacagtccaagtggatctactctaatctatcataacaaaaattcactaatcacatgtgcaatccaacgaactcgcgtacgggcgcgaaaccagattac 28421409  T
Q  206 aaacaa-tatgagaatttaacctttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaa 304  Q
    ||| || ||||| || | ||  | | |  ||||||| |||| |||||| | || |||||||||||| | |||||| |||||||||||||||| |||||||    
T  28421408 aaaaaagtatgaaaagtgaaaatctacagataacagatagagtttaaatatggtgaatggatcgaccgtcaacactgtatcaaaatccaagtaccaacaa 28421309  T
Q  305 ct 306  Q
    ||    
T  28421308 ct 28421307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 348
Target Start/End: Original strand, 9192326 - 9192412
Alignment:
Q  262 tggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataa 348  Q
    |||||||||||||||||||||||||||||||| || ||| || | || || | || ||| |||  |||| |||||||||||||||||    
T  9192326 tggatcgactgccaacacggtatcaaaatccacgtaccagcagccccatgaacaaaacaacaagaataatagctctttcgagcataa 9192412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 523
Target Start/End: Complemental strand, 24405066 - 24405024
Alignment:
Q  481 gatgagtccaatacattagtaaccaaaccctttcgggttaaca 523  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  24405066 gatgagtccaatacgttaataaccaaaccctttcgggttaaca 24405024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 44558472 - 44558561
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca 345  Q
    |||||||||||| || | |||||| |||||||||||||||||||| || |||| || | |   |||||| ||||| ||||||||||||||    
T  44558472 ggcgaatggatcaaccggcaacacagtatcaaaatccaagtgccagcagctccgtgaacacagcagcaagcataaaagctctttcgagca 44558561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 311
Target Start/End: Original strand, 47005531 - 47005801
Alignment:
Q  41 agatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaa-cagacctaatggatccactctaatctatca 139  Q
    ||||||||||| | ||||||||||  ||| |||| ||| | ||||||||  |||||||||||  | ||| ||| || | |||||| |||||||||||||     
T  47005531 agatacaaagattggggggacataggaccagacctagg-ataacccaaacaggaatacatcgtgataaagcagtccaagtggatctactctaatctatcc 47005629  T
Q  140 taa-caaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagtt-acaaacaatatgagaatttaacctttgccaataa 237  Q
    ||| |||| ||| |||||||||  |||||||| | |||||| ||||||| |||| |||||||||| | ||| || |||| || | ||   ||||  | ||    
T  47005630 taaccaaaattc-actaatcacatacgcaacctagcgaacccgcgtacgagcgcgaaaccaagttcaaaaaaaagatgaaaagtgaa-tattgcagagaa 47005727  T
Q  238 cagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    || ||||| | |||  | ||||||||||||||| | |||| |||||||  |||||||||||||||| |||||||    
T  47005728 caattagagtgtaaccagggcgaatggatcgaccgtcaacgcggtatccgaatccaagtgccaacagctccctg 47005801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 557662 - 557578
Alignment:
Q  260 aatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagc 344  Q
    ||||||||||| |||||||||||||||| ||||| || |||||||| ||||| | || ||| ||   |||| |||||||||||||    
T  557662 aatggatcgaccgccaacacggtatcaagatccacgtaccaacaaccccctgaacaaaacatcaggtataatagctctttcgagc 557578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 47005839 - 47005903
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaac 522  Q
    ||||||||||||| | ||||  ||||||||||||||| | |||||||| ||||||| ||||||||    
T  47005839 acgcgtaagaactaagatcgagggatgagtccaatacgtcagtaaccagacccttttgggttaac 47005903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 17766018 - 17766080
Alignment:
Q  281 gtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagc 344  Q
    ||||||||||||||||||||||| ||||| | | ||| |||||| ||||| |||||||||||||    
T  17766018 gtatcaaaatccaagtgccaacagctcccagaataag-cagcaagcataaaagctctttcgagc 17766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 19067338 - 19067400
Alignment:
Q  281 gtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagc 344  Q
    ||||||||||||||||||||||| ||||| | | ||| |||||| ||||| |||||||||||||    
T  19067338 gtatcaaaatccaagtgccaacagctcccagaataag-cagcaagcataaaagctctttcgagc 19067400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 47720969 - 47720914
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||||||| ||||||| |||||||| ||||| || |||||||| |||||    
T  47720969 ggcgaatggatcgaccgccaacaaggtatcaagatccacgtaccaacaaccccctg 47720914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 30499007 - 30499061
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccct 310  Q
    ||||||||||||||| ||||||||||| |||| |||||||| ||| |||| ||||    
T  30499007 ggcgaatggatcgaccgccaacacggtttcaagatccaagtaccagcaaccccct 30499061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 345
Target Start/End: Original strand, 51537389 - 51537579
Alignment:
Q  152 actaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaa 251  Q
    |||||||||||||| ||||||  ||||| ||||||| || | |||||| |||||||| ||||||| || | || | |||| || |||||||||  |||||    
T  51537389 actaatcacggacgtaacccagtgaaccggcgtacgagcacgaaaccaggttacaaa-aatatgaaaagtgaa-cattgcgaagaacagttagggtttaa 51537486  T
Q  252 aaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca 345  Q
       ||||||||||||| |   |||  ||| |||||| ||||||||| ||| ||||||||| | ||  |||||| || || ||||||||||||||    
T  51537487 tttcggcgaatggatcaaacaccagtacgatatcaagatccaagtggcaaaaactccctgaacaaagcagcaagca-aaaagctctttcgagca 51537579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 26373385 - 26373477
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataa 348  Q
    ||||||||||||||| | |||||||||||||| ||||| || ||| ||||  | || | || ||| ||| || || |||||||||||||||||    
T  26373385 ggcgaatggatcgaccgtcaacacggtatcaagatccacgtaccagcaacctcttgaacaaaacaacaagcaaaatagctctttcgagcataa 26373477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 6e-82; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 2770673 - 2770943
Alignment:
Q  36 gagagagatacaaagacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaacagacctaatggatccactctaatct 135  Q
    |||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  2770673 gagagatatacaaagact--ggggacataaaacttgacccaggtacaacccaaaaggggatacatcgatgaaaacagacctaatggatccactctaatct 2770770  T
Q  136 atcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaat 235  Q
    ||||||| |||||| |||||||||||||||||  ||| | |||| ||     ||||| ||||||||||||||| |||||||||| ||||| |||||||||    
T  2770771 atcataataaagtttaactaatcacggacgcaggccagcaaacccgc-----ggcgcgaaaccaagttacaaaaaatatgagaagttaacatttgccaat 2770865  T
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgca 313  Q
    |||||||||| |||||||||| | ||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||    
T  2770866 aacagttagagtttaaaaacgacaaatggattgaccgccaacacggtatcaaaatccaagtgtcaacagctccctgca 2770943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 255 - 431
Target Start/End: Original strand, 43168547 - 43168724
Alignment:
Q  255 cggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataaa-tacc 353  Q
    ||||||||||||| |||| ||||||||||||||||| ||| || ||||||||||||| | |||| ||||| ||||| |||||||||||||| ||| || |    
T  43168547 cggcgaatggatcaactgtcaacacggtatcaaaattcaaatgtcaacaactccctgaacaaga-agcaagcataa-agctctttcgagcacaaagtatc 43168644  T
Q  354 --agtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagc 431  Q
       ||||| | | |||| ||||||||||||||||||| || |||||| ||  ||||||||||||||||||| ||||||||    
T  43168645 tgcgtgtaagcaaacaaaacgacttgaaacctgcagatctcaacagatctgcaaacatcagagagtcgaagaagtcaagc 43168724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 50 - 346
Target Start/End: Original strand, 19932118 - 19932415
Alignment:
Q  50 gacttgggggacataaaacctgacccaggtacaacccaaaacggaatacatcgata-aaaacagacctaatggatccactctaatctatcataacaaagt 148  Q
    |||| ||||||||| | || ||||||| ||||||||||||  |||||||| | ||| ||| |||||||| |||||| || |||||||||| |||||||      
T  19932118 gactggggggacattatacttgacccaagtacaacccaaacgggaatacaacaatataaatcagacctagtggatcaaccctaatctatcttaacaaaaa 19932217  T
Q  149 tcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttac-aaacaatatgagaatttaacctttgccaataacagttagaat 247  Q
    |  || ||| |||| ||||||||| |||||| |||| | ||||| |||| ||||||| ||| ||| ||| || | || | |||| || |||| ||||  |    
T  19932218 ttcaccaattacgggcgcaacccagcgaacccgcgtgcaggcgcgaaacaaagttacaaaaaaatgtgaaaaatgaa-cattgcgaagaacaattagggt 19932316  T
Q  248 ttaaaa-acggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat 346  Q
    ||||||  ||  |||||||||||| |||||||||||||  ||||||||||||||||| ||||||| | ||  |||||| ||||| |||||||||||||||    
T  19932317 ttaaaattcgatgaatggatcgaccgccaacacggtat-gaaatccaagtgccaacagctccctgaacaatgcagcaagcataaaagctctttcgagcat 19932415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 544
Target Start/End: Complemental strand, 24099480 - 24099391
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaa---accctttcgggttaacataaccatacccttttgggttt 544  Q
    |||||||| |||||| ||||  |||||||| |||||| ||| |||||||   ||||||||||||||| | ||||||||||||| ||||||    
T  24099480 acgcgtaaaaactcagatcgagggatgagttcaatacgttaataaccaacagaccctttcgggttaataaaaccataccctttcgggttt 24099391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 12466240 - 12466312
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactcc 308  Q
    ||||||| || |||||  |||||||||||||||||  ||||||| ||| ||||||||||||||| ||| ||||    
T  12466240 aacagttcgagtttaagtacggcgaatggatcgacctccaacacagtaacaaaatccaagtgccgacagctcc 12466312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 24351852 - 24351802
Alignment:
Q  260 aatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccct 310  Q
    |||||||||||  |||| ||| |||||||||||||||||||||| ||||||    
T  24351852 aatggatcgacaaccaatacgttatcaaaatccaagtgccaacatctccct 24351802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 555
Target Start/End: Original strand, 17589916 - 17589964
Alignment:
Q  507 accctttcgggttaacataaccatacccttttgggtttataaaaccaaa 555  Q
    ||||||||||||||| | || |||||||||| ||||||| |||||||||    
T  17589916 accctttcgggttaagagaatcataccctttcgggtttacaaaaccaaa 17589964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 24100931 - 24100883
Alignment:
Q  41 agatacaaagacttgggggacataaaacctgacccaggtacaacccaaa 89  Q
    ||||||||||| | | ||||||| | |||||||||||||||||||||||    
T  24100931 agatacaaagattggtgggacattagacctgacccaggtacaacccaaa 24100883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 272 - 537
Target Start/End: Complemental strand, 39229136 - 39228869
Alignment:
Q  272 gccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataaa-taccag--tgtaggaatacaa 368  Q
    ||||||||  |||||| |||| || ||||||||||| ||| | ||  |||||| ||||| | ||||||||||||| || |||| |  |||||| | ||||    
T  39229136 gccaacacaatatcaagatccgagggccaacaactctctgaacaaagcagcaagcataaaa-ctctttcgagcatgaagtaccggcatgtaggcagacaa 39229038  T
Q  369 gacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaaacatacgcgtaagaa 468  Q
    |||||||||||| ||||| | || |||||| || ||||||||||||| |||||| |||||| | |||||| ||||  |  |||| ||| |||||||||||    
T  39229037 gacgacttgaaaactgcaaatctcaacagatctgaaaacatcagagattcgaagaagtcaaaccaccaaacacaagcagtttcagacagacgcgtaagaa 39228938  T
Q  469 ctcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttt 537  Q
    |||| ||||  ||||||||| ||||| |||||||||| | ||||||||||||||| ||||||| |||||    
T  39228937 ctcagatcgagggatgagtcgaatacgttagtaaccagaacctttcgggttaacagaaccatagccttt 39228869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 255 - 516
Target Start/End: Original strand, 12419331 - 12419595
Alignment:
Q  255 cggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca-taaatacc 353  Q
    |||||||||||| ||||| |||| |  ||  ||||||||||||||| || ||||||| |  |  |||||| ||||| |||||||||||||| ||| | |     
T  12419331 cggcgaatggattgactgtcaacgcaataataaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcgagcactaagttct 12419430  T
Q  354 a--gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattc 451  Q
    |  |||||||  |||||||||||||||||||| |||| || |||| | || | || || |||||||  || ||||||||| |||||| ||||     |||    
T  12419431 aaagtgtaggcgtacaagacgacttgaaacctacagatctcaacaaatctgagaaaattagagagtaaaaacagtcaagccaccaaacacaataggtttc 12419530  T
Q  452 aaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgg 516  Q
    ||||||||||||||||||||| |||   ||||||||||||||| |||||||||||||||||||||    
T  12419531 aaacatacgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaaccctttcgg 12419595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 255 - 516
Target Start/End: Original strand, 12431391 - 12431655
Alignment:
Q  255 cggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca-taaatacc 353  Q
    |||||||||||| ||||| |||| |  ||  ||||||||||||||| || ||||||| |  |  |||||| ||||| |||||||||||||| ||| | |     
T  12431391 cggcgaatggattgactgtcaacgcaataataaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcgagcactaagttct 12431490  T
Q  354 a--gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattc 451  Q
    |  |||||||  |||||||||||||||||||| |||| || |||| | || | || || |||||||  || ||||||||| |||||| ||||     |||    
T  12431491 aaagtgtaggcgtacaagacgacttgaaacctacagatctcaacaaatctgagaaaattagagagtaaaaacagtcaagccaccaaacacaataggtttc 12431590  T
Q  452 aaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgg 516  Q
    ||||||||||||||||||||| |||   ||||||||||||||| |||||||||||||||||||||    
T  12431591 aaacatacgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaaccctttcgg 12431655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 18481892 - 18481999
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagct 335  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||| |  |||||||||||||||||||||||  | ||| |||||| | ||| ||||    
T  18481892 aacagttaggatttaaaaatggcgaatggatcgaccgccaacacggtaac-gaatccaagtgccaacaactccctaaacaag-cagcaagcgtaaaagct 18481989  T
Q  336 ctttcgagca 345  Q
    ||||||||||    
T  18481990 ctttcgagca 18481999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 521
Target Start/End: Complemental strand, 5136454 - 5136174
Alignment:
Q  236 aacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagct 335  Q
    ||||||||| ||||||||| ||||||||||||||| || | ||||||| | || |||||||||||||| ||||||| | ||| |||||| | | | ||||    
T  5136454 aacagttaggatttaaaaatggcgaatggatcgaccgctagcacggtaacgaa-tccaagtgccaacagctccctgaacaag-cagcaagcgtgaaagct 5136357  T
Q  336 ctttcgagcataaatacca--gtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaa 433  Q
    ||||||||||  | |||||  || |||| |  ||  |   ||||||||||||||| || ||||| |||  |||||||||||| || ||| |   |  | |    
T  5136356 ctttcgagca--agtaccaaagtataggcagccataattccttgaaacctgcagaactcaacagtcctggaaacatcagagaatcaaaggataga--cca 5136261  T
Q  434 ccaaagacaacgaaattcaaacatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaa 521  Q
    ||||| ||||||   ||| |||| ||||||||||||||| ||||  ||||||||||||||| ||| || |||||||||||||||||||    
T  5136260 ccaaatacaacggt-ttccaacagacgcgtaagaactcagatcgagggatgagtccaatacgttaatagccaaaccctttcgggttaa 5136174  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 8216548 - 8216630
Alignment:
Q  126 actctaatctatcataacaaagttcaactaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    ||||||||||||| |||||||  |  |||| |||| ||||||||||| |||||| |||||||||||  |||||||||||||||    
T  8216548 actctaatctatcctaacaaaaatacactagtcactgacgcaacccaacgaacccgcgtacgggcgtgaaaccaagttacaaa 8216630  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 555
Target Start/End: Complemental strand, 4730749 - 4730647
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaa----accctttcggg-ttaacataaccatacccttttgggtttataaaacc 552  Q
    |||||| |||||||| ||||| ||||||||||||||| |||||||||||    ||||||||||| |||||| ||||  ||||||| ||| |||| |||||    
T  4730749 acgcgttagaactcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgggtttaacagaaccgaaccctttcgggattatgaaacc 4730650  T
Q  553 aaa 555  Q
    |||    
T  4730649 aaa 4730647  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 311
Target Start/End: Complemental strand, 38002269 - 38002109
Alignment:
Q  152 actaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttac-aaacaatatgagaatttaacctttgccaataacagttagaattta 250  Q
    ||||||||| | ||||||||| | |||| |||||||||||| |||||||||||| ||| ||||||| || | ||| | | |  | ||   ||||| ||||    
T  38002269 actaatcacaggcgcaacccagcaaacccgcgtacgggcgcgaaaccaagttacaaaaaaatatgaaaagtgaacatctacatagaatcattagagttta 38002170  T
Q  251 aaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    |||| ||||||||||||||| |||| |||| || |||||| | |||||||||  |||||||    
T  38002169 aaaatggcgaatggatcgaccgccagcacgataacaaaattctagtgccaacggctccctg 38002109  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 428
Target Start/End: Complemental strand, 4724797 - 4724422
Alignment:
Q  56 ggggacataaaacctgacccaggtacaacccaaaacggaatacatcgataaaaacagacctaatggat---ccactctaatctatcataacaaagttcaa 152  Q
    |||||||| | |||||||||||||| ||| ||| | || || |||||||||||||||||||| |||||   | || |||||||||  |||||||  |  |    
T  4724797 ggggacattagacctgacccaggtaaaactcaagaggggatgcatcgataaaaacagacctagtggatcaacaaccctaatctattctaacaaatattca 4724698  T
Q  153 ctaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaacaatatgagaatttaacctttgccaataacagttagaatttaaa 252  Q
    | ||||||    |||| ||| || ||| | |||||||    ||||||||||||||| |||||||||  | ||| | |||||| |||| |||   |||||     
T  4724697 ccaatcacatgtgcaatccaacgcacccgtgtacggg---gaaaccaagttacaaaaaatatgagaggtaaacatctgccaagaacaattaaggtttaag 4724601  T
Q  253 aacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca-taaata 351  Q
      || ||||||||| ||| || ||| | ||| |||| | |||||| |||||| ||| ||   ||  |||||| ||||| |||||||||||||| ||| ||    
T  4724600 ttcgacgaatggattgaccgctaactcagtaacaaagttcaagtgtcaacaattccatgatcaaagcagcaagcataaaagctctttcgagcattaagta 4724501  T
Q  352 cc--agtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtca 428  Q
     |  |||||||| | ||||||| ||||||||| ||| || || |||| | || |||||||||||||||||||| |||||    
T  4724500 tcatagtgtaggtaaacaagacaacttgaaacttgccgatctcaacaaatctaaaaacatcagagagtcgaagtagtca 4724422  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 14694901 - 14694992
Alignment:
Q  255 cggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcat 346  Q
    |||||||||||||||| || |||| ||||||||||| ||||||||| || |||| || | ||  || ||| ||||| |||||||||||||||    
T  14694901 cggcgaatggatcgaccgcaaacatggtatcaaaattcaagtgccatcagctccatgaacaaagcaacaagcataaaagctctttcgagcat 14694992  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 39711495 - 39711541
Alignment:
Q  257 gcgaatggatcgactgccaacacggtatcaaaatccaagtgccaaca 303  Q
    |||||||||| ||| |||||||||||| |||||||||||||||||||    
T  39711495 gcgaatggatagaccgccaacacggtaacaaaatccaagtgccaaca 39711541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 3388396 - 3388323
Alignment:
Q  228 ttgccaataacagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaa 301  Q
    ||||||| |||||||||  ||||||  ||||||||||||| || ||||||| |  |||||||||||||||||||    
T  3388396 ttgccaaaaacagttagggtttaaattcggcgaatggatcaaccgccaacatgacatcaaaatccaagtgccaa 3388323  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 9848249 - 9848196
Alignment:
Q  258 cgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctg 311  Q
    ||||||||||||  |||||||||| | ||| |||||||||||||||||||||||    
T  9848249 cgaatggatcgatcgccaacacggcaacaacatccaagtgccaacaactccctg 9848196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 4730949 - 4730864
Alignment:
Q  257 gcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagca 345  Q
    |||||||||| ||| |||||||| ||| |||| |||||||||| ||||||||||||| ||| |||||| ||| | ||||||||||||||    
T  4730949 gcgaatggattgaccgccaacaccgtaacaaa-tccaagtgccgacaactccctgcacaag-cagcaagcatta-agctctttcgagca 4730864  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 22193662 - 22193734
Alignment:
Q  238 cagttagaatttaaaaacggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccct 310  Q
    |||||||| | |||| | ||||||||||||||  | ||||||||||  | |||||||||||||||||||||||    
T  22193662 cagttagagtataaagatggcgaatggatcgatcgtcaacacggtacaagaatccaagtgccaacaactccct 22193734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 18482109 - 18482172
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaa 521  Q
    ||||||||||||||| ||||  ||||||||||||||  ||| ||||||||| || |||||||||    
T  18482109 acgcgtaagaactcagatcgagggatgagtccaatatgttaataaccaaactctctcgggttaa 18482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 35658082 - 35658031
Alignment:
Q  507 accctttcgggttaacataaccatacccttttgggtttataaaaccaaacca 558  Q
    ||||||| ||||||| | ||||||||||||| ||||||| ||||||||||||    
T  35658082 acccttttgggttaatagaaccataccctttcgggtttacaaaaccaaacca 35658031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 558
Target Start/End: Complemental strand, 20105400 - 20105294
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacatta--gtaaccaa----accctttcgggttaacataaccatacccttttgggtttataaaac 551  Q
    ||||||||||||||| ||||   |||||||||||||| |||  ||||||||    ||||||||||||||||| ||| | ||||||| |||||| | ||||    
T  20105400 acgcgtaagaactcagatcgagtgatgagtccaatacgttaaagtaaccaatcagaccctttcgggttaacagaactagaccctttcgggtttttgaaac 20105301  T
Q  552 caaacca 558  Q
    | |||||    
T  20105300 cgaacca 20105294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 33050829 - 33050866
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatcca 293  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  33050829 ggcgaatggatcgaccgccaacacggtatccaaatcca 33050866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 257 - 554
Target Start/End: Complemental strand, 30829 - 30528
Alignment:
Q  257 gcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataaatacc--- 353  Q
    |||||||||| ||| | |||||||||| |||| |||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||  |  | |       
T  30829 gcgaatggattgaccgtcaacacggtaacaaa-tccaagtgccaacaactccctgcacaag-cagcaagcataa-agctctttcgagcacgaggaaccaa 30733  T
Q  354 agtgtaggaatacaagacgacttgaaacctgcagaccttaacagaccttaaaacatcagagagtcgaagcagtcaagcaaccaaagacaacgaaattcaa 453  Q
    |||||| |   |||||  | |||||| |||||||| || |||||| ||  || |||||||||||| ||||   || ||||||||| ||||| |  | |||    
T  30732 agtgtaagcggacaagttgccttgaagcctgcagatctcaacagatctggaatcatcagagagtc-aagcctgcacgcaaccaaacacaacaagttacaa 30634  T
Q  454 acatacgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaa----accctttcggg-ttaacataaccatacccttttgggtttataa 548  Q
     |  |||||| |||||||||||||| ||||||||||||||| |||||||||||    ||||||||||| |||||  ||||  ||||||| |||||||| |    
T  30633 tctgacgcgttagaactcatatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgggtttaacggaaccggaccctttcgggtttatga 30534  T
Q  549 aaccaa 554  Q
    ||||||    
T  30533 aaccaa 30528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 543
Target Start/End: Original strand, 353236 - 353321
Alignment:
Q  458 acgcgtaagaactcatatcgtaggatgagtccaatacattagtaaccaaaccctttcgggttaacataaccatacccttttgggtt 543  Q
    ||||||||||||||| ||||  ||||||||||||||  | |||||||| ||||||||| |||||||  |||| ||||||| |||||    
T  353236 acgcgtaagaactcagatcgagggatgagtccaatatgtcagtaaccagaccctttcgagttaacaggaccagaccctttcgggtt 353321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 9313 - 9369
Alignment:
Q  152 actaatcacggacgcaacccaccgaacctgcgtacgggcgcaaaaccaagttacaaa 208  Q
    ||||||||| | ||||||| | |||||| ||||||||| || |||||||||||||||    
T  9313 actaatcacaggcgcaacctagcgaacccgcgtacgggtgcgaaaccaagttacaaa 9369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 31222 - 31130
Alignment:
Q  256 ggcgaatggatcgactgccaacacggtatcaaaatccaagtgccaacaactccctgcagaagacagcaaccataacagctctttcgagcataa 348  Q
    ||||||||||||||| | |||||||||||||| ||||| || ||| ||||  |||| | || ||| ||  || || |||||||||||||||||    
T  31222 ggcgaatggatcgaccgtcaacacggtatcaagatccacgtaccagcaacctcctgaacaaaacaccaggcaaaatagctctttcgagcataa 31130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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