View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9178_low_9 (Length: 561)
Name: NF9178_low_9
Description: NF9178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9178_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 49 - 543
Target Start/End: Original strand, 35298042 - 35298548
Alignment:
| Q |
49 |
ggaagaggagaacttcatt-catcaatcatatttatttcttcttctacattgcctgtcttccccttgaaaggtcagctcaaatgtctgcatcgcatcttt |
147 |
Q |
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| T |
35298042 |
ggaagaggagaacttcatttcatcaatcatatttatttcttcttctacattgcctgccttccccttgaaaggtcagctcaaatgtctgcatcgcatcttt |
35298141 |
T |
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| Q |
148 |
cacatgttactcattgtattgtcaaatcaattatttggaatcatcattgcatgcacatcattaactaacacacgcccccttctttatcaagtgaagaaca |
247 |
Q |
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| T |
35298142 |
cacatgttactcattgtattgtcaaatcaattatttggaatcatcattgcatgcacatcattaactaacacacgcccccctctttatcaagtgaagaaca |
35298241 |
T |
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| Q |
248 |
ctccaaaaataagatatatgtgtatcggatacctataatatacccgatat-----------tttatacttttgtttattttcattattcaatgaaggagt |
336 |
Q |
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| T |
35298242 |
ctccaaaaatgagatatatgtgtatcggatacgtataagatacccgatattacctaaatattttatacttttgtttattttcattattcaatgaaggagt |
35298341 |
T |
|
| Q |
337 |
agtttctttgttgtcttagaattatggaatgtaattcaatgataaacttatataatttcaattcattcttttattatggaccttcaaagaacttaattca |
436 |
Q |
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| T |
35298342 |
agtttctttgttgtcttagaattatggaatgtaattcaatgataaacttatataatttcaattctttcttttattatggaccttcaaagaacttaattca |
35298441 |
T |
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| Q |
437 |
atcttattgtttttaagttgaaccgtggatatgattgtttaaactttgttaaatcaagatggcaatttatatatgcattataagatcaaacaatcatatg |
536 |
Q |
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| T |
35298442 |
atcttattgtttttaagttgaaccgtggatatgattgtttaaactttgttaaatcaagatggcaatttatatatgcattataagatcaaacaatcatatg |
35298541 |
T |
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| Q |
537 |
attataa |
543 |
Q |
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| T |
35298542 |
attataa |
35298548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 444
Target Start/End: Complemental strand, 51460469 - 51460371
Alignment:
| Q |
347 |
ttgtcttagaattatggaatgtaattcaatgataaacttat-ataatttcaattcattcttttattatggaccttcaaagaacttaattcaatcttatt |
444 |
Q |
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||||||||||||||||||| ||||| |||||| | |||| | |||||| ||||||||||||| ||||| | ||||||| | || |||||||||||| |
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| T |
51460469 |
ttgtcttagaattatggaaagtaatccaatgacagacttttcataattcaaattcattcttttgttatgaagtttcaaagtatctacttcaatcttatt |
51460371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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