View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9179_high_2 (Length: 540)
Name: NF9179_high_2
Description: NF9179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9179_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 113 - 369
Target Start/End: Original strand, 33628032 - 33628290
Alignment:
| Q |
113 |
actaaactccttcaatcatatgagggggaactcttatttttgatataacgtaattttggtgtggatcaatttagtcttttnnnnnnnnn--ttatagaga |
210 |
Q |
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| T |
33628032 |
actaaactcattcaatcatatgagggtgaactcttatttttgatataacgtaattttggtgtggatcaatttagtcttttttaaaaaaaaattatagaga |
33628131 |
T |
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| Q |
211 |
gattaatttgtcccttgtataaaaatggcaaagattactttgaacttgttgagaaatgttcaggatgtgagagaaacagcgggtcaaatgctccaagact |
310 |
Q |
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| T |
33628132 |
gattaatttgtccctagtataaaaatggcaaagattactttgaacttgttgagaaatgttgaggatgtgagagaaacagtgggtcaaatgctccaagact |
33628231 |
T |
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| Q |
311 |
ataagagagggagacacaacatctaaattcaaaattttaagacatgggttaatgagtca |
369 |
Q |
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| T |
33628232 |
ataagagagggagacacaacatctaaattcaaaattttaagacatggattaatgagtca |
33628290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 360 - 514
Target Start/End: Original strand, 33628769 - 33628923
Alignment:
| Q |
360 |
taatgagtcacctatcttataaatccaatattttactcgttcataggtgattttagacataattaactactcacacttcaaacccgacaatctccctgcg |
459 |
Q |
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| T |
33628769 |
taatgagtcacctatcttataaatccaatattttactcgttcataggtgatttaagacataattaactactcacacttcaaacccgacaatctctctgca |
33628868 |
T |
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| Q |
460 |
agtgtgagttcccaccttctatacaggattcgtgtgagtttccaccttctataca |
514 |
Q |
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| T |
33628869 |
agtgtgagtttccaccttctatacaagattcgtgtgagtttccaccttctataca |
33628923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 33626891 - 33626988
Alignment:
| Q |
18 |
actagtagtagcttgttagccttgctattgggcattcttatttcttaaatgaaaatgaaaaggacaaattaaagaaataaagacaaatcgtcaagact |
115 |
Q |
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| T |
33626891 |
actagtagtagcttgttagccttgctattgggcattcttatttcttaaatgaaaatgaaaaggaaaaattaaagaaataaagacaaatcgtcaagact |
33626988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 293 - 368
Target Start/End: Original strand, 33628287 - 33628362
Alignment:
| Q |
293 |
gtcaaatgctccaagactataagagagggagacacaacatctaaattcaaaattttaagacatgggttaatgagtc |
368 |
Q |
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| T |
33628287 |
gtcaaatgctccaagactataagagagggagacacaacatctaaattcaaaattttaagacatggattaatgagtc |
33628362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 515553 - 515613
Alignment:
| Q |
295 |
caaatgctccaagactataagagagggagacacaacatctaaattcaaaattttaagacat |
355 |
Q |
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| T |
515553 |
caaatgctctaagaccataagagagggagacgtaacatcttcatccaaaatcttaagacat |
515613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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