View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9179_high_4 (Length: 359)
Name: NF9179_high_4
Description: NF9179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9179_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 4 - 343
Target Start/End: Original strand, 4329534 - 4329873
Alignment:
| Q |
4 |
acaagttcaaaaaccgaagcgcggatagcttcgcaatttgaggaggaatagttccaaaaagattattacttgaaagatcaatcattctcacaagtatcaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329534 |
acaagttcaaaaaccgaagcgcggatagcttcgcaatttgaggaggaatagttccaaaaagattattacttgaaagatcaatcattctcacaagtatcaa |
4329633 |
T |
|
| Q |
104 |
gttgtctctatactccaactcatctccttttggaaccaggacaagactttctttgtaattgttatagttaaagccaaaaccatagttatattttaaaggg |
203 |
Q |
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| T |
4329634 |
gttgtctctatactccaactcatctccttttggaaccaggacaagactttctttgtaattgttatagttaaagccaaaaccatagttatattttaaaggg |
4329733 |
T |
|
| Q |
204 |
ttggcaaagaaatcatcttcaccagccattgttttcatttcattcaaacaattggggattgttcctgataggctattgttggcaatatctagcacaataa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329734 |
ttggcaaagaaatcatcttcaccagccattgttttcatttcattcaaacaattggggattgttcctgataggctattgttggcaatatctagcacaataa |
4329833 |
T |
|
| Q |
304 |
gggacgaaagttgacacatcttttgagtaatgctaccttt |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4329834 |
gggacgaaagttgacacatcttttgagtaatgctaccttt |
4329873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 4498377 - 4498038
Alignment:
| Q |
4 |
acaagttcaaaaaccgaagcgcggatagcttcgcaatttgaggaggaatagttccaaaaagattattacttgaaagatcaatcattctcacaagtatcaa |
103 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498377 |
acaagttcaaaaaccgaagtgcagatagcttcgaaatttgaggtggaatagttctaaaaagattattacttgaaagatcaatcattctcacaagtatcaa |
4498278 |
T |
|
| Q |
104 |
gttgtctctatactccaactcatctccttttggaaccaggacaagactttctttgtaattgttatagttaaagccaaaaccatagttatattttaaaggg |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4498277 |
attgtctctatactccaactcatctccttttggaacaaggacaagactttctttgtaattgttatagttaaagccaaaaccatagaaatattttaaaggg |
4498178 |
T |
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| Q |
204 |
ttggcaaagaaatcatcttcaccagccattgttttcatttcattcaaacaattggggattgttcctgataggctattgttggcaatatctagcacaataa |
303 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498177 |
ttggcaaagaaatcatcttcacccgccagtgttttcatttcattcaaacaattggggattgttcctgataggctattgttggcaatatctagcacaataa |
4498078 |
T |
|
| Q |
304 |
gggacgaaagttgacacatcttttgagtaatgctaccttt |
343 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||| |
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| T |
4498077 |
gggacgaaagttggcacatcttttgagtaatgcaaccttt |
4498038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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