View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9179_high_6 (Length: 245)
Name: NF9179_high_6
Description: NF9179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9179_high_6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 4329292 - 4329530
Alignment:
| Q |
7 |
aggaggagcagagagctgaggattacctgcatagttaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
106 |
Q |
| |
|
||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4329292 |
aggaggaccacaaagctgaggattacctgcatagttaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
4329391 |
T |
|
| Q |
107 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacctgaaattttgttcaatgaaagatcaagtgattctaacaatttcattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4329392 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacctgaaattttgttcaatgaaagatcaagtgattctaacaatttcattt |
4329491 |
T |
|
| Q |
207 |
tccccatgtcatttggtatctctccataaagactgtttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4329492 |
tccccatgtcatttggtatctctccataaagactgtttt |
4329530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 4498617 - 4498382
Alignment:
| Q |
7 |
aggaggagcagagagctgaggattacctgcatagttaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
106 |
Q |
| |
|
|||||||||| | |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498617 |
aggaggagcacatagctaaggattacatgcatagctaagtgcttcaaagctctgaagttgagtgctagttggaattcttcctgataagttgttgtttgat |
4498518 |
T |
|
| Q |
107 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacctgaaattttgttcaatgaaagatcaagtgattctaacaatttcattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4498517 |
agattcaggaaacttaaaaatgacaaatcagacatactttgaggtatttgacatgaaattttgttcaatgaaagatcaattgattctaacaatttcattt |
4498418 |
T |
|
| Q |
207 |
tccccatgtcatttggtatctctccataaagactgttt |
244 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
4498417 |
tccccatgtcatttggta--tctccataaagacggttt |
4498382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University