View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9179_low_1 (Length: 657)
Name: NF9179_low_1
Description: NF9179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9179_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 23 - 635
Target Start/End: Complemental strand, 40856615 - 40856003
Alignment:
| Q |
23 |
accccagcatcaatagcaactggtcgaccaaggtgagccaactctgcttcaaggtcatcaatgcttctagtaatgaaagacgcaatccctggaatgcgag |
122 |
Q |
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| T |
40856615 |
accccagcatcaatggcaactggtcgaccaaggtgagccaactctgcttcaaggtcatcaacgcttctagtaatgaaagacgcaatccctggaatgcgag |
40856516 |
T |
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| Q |
123 |
ctctaatcacagactctagatgctaaaaccaaatgagttttatgagtaatcaagcagatttggtaagatacaagnnnnnnnnnnnnnnnnnnngcatgtc |
222 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40856515 |
ctctgatcacagactctagatgctaaaaccaaatgagttttatgagtaatcaagcagatttggtaagatacaagaaaaaaatagccaaaaaaagcatgtc |
40856416 |
T |
|
| Q |
223 |
catccaacactgtctaatacaaggataaataaaaacctttgacagtagccttgcaagatattctgagcccattttgctggccaagtgtgcgtaatcagga |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856415 |
gatccaacactgtctaatacaaggataaataaaaacctttgacagtagccttgcaagatattctgagcccattttgctggccaagtgtgcgtaatcagga |
40856316 |
T |
|
| Q |
323 |
ttggtggcaaaaaattcacgctctctctgccgagctgcaatcatatctacgttcttattaatatcttcctgagaacggtttacaattcccacccaaggat |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856315 |
ttggtggcaaaaaattcacgctctctctgccgagctgcaatcatatctacgttcttattaatatcttcctgagaacggtttacaattcccacccaaggat |
40856216 |
T |
|
| Q |
423 |
tacgaagtcgatatgatcttccttcaaggacctacaatatgacagaatgggaacattagctagcagaaattatcatgcacctgtgtaactctgtcaatta |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856215 |
tacgaagtcgatatgatcttccttcaaggacctacaatatgacagaatgggaacattagctagcagaaattatcatgcacctgtgtaactctgtcaatta |
40856116 |
T |
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| Q |
523 |
acatatgtagaaaatccacaataagttccaacacagagccaaatatataacaacataaatttactattgagtgcctagaaaagatatgattcttacatcc |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40856115 |
acatatgtagaaaatccacaataagttccaacacagagccaaatatataacaacatgaatttactattgagtgcctagaaaagatatgattcttacatcc |
40856016 |
T |
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| Q |
623 |
aaagcatttgttc |
635 |
Q |
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||||||||||||| |
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| T |
40856015 |
aaagcatttgttc |
40856003 |
T |
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