View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9179_low_13 (Length: 205)

Name: NF9179_low_13
Description: NF9179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9179_low_13
NF9179_low_13
[»] chr1 (2 HSPs)
chr1 (19-194)||(33928741-33928916)
chr1 (20-194)||(37501878-37502052)
[»] chr3 (3 HSPs)
chr3 (18-194)||(32925586-32925764)
chr3 (45-170)||(34545859-34545984)
chr3 (20-60)||(33293488-33293528)
[»] chr2 (1 HSPs)
chr2 (20-194)||(36284278-36284455)
[»] chr8 (3 HSPs)
chr8 (19-187)||(42346992-42347157)
chr8 (121-194)||(32331589-32331662)
chr8 (22-194)||(43190061-43190234)
[»] chr4 (1 HSPs)
chr4 (20-190)||(10406225-10406395)
[»] chr5 (1 HSPs)
chr5 (19-84)||(3548884-3548949)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 33928916 - 33928741
Alignment:
Q  19 ccatccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgtcc 118  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  33928916 ccatccacattaagaaccattgtatcattatcaccatgttgccaacatacttcatgagtgggcctaactaatgcggttgaaatagtattgtcgaatgccc 33928817  T
Q  119 tctgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaacaccaa 194  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| | |||| ||| |||||||||||||    
T  33928816 tctgtgaaacttgcaattgcgtataaactgcagaaattgtagttgagactagcagttgaataccatcaaacaccaa 33928741  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 37502052 - 37501878
Alignment:
Q  20 catccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgtcct 119  Q
    |||| ||||||||||||||||||| ||||||| |||| | | |||| |||||||||||||||||| ||||||||||| ||||| |||||| ||||| ||     
T  37502052 catctacattaagaaccattgtatcattatcaccatgctactaacatacttcatgagtgggcctaactaatgcggttaaaataatattgttgaatgcccg 37501953  T
Q  120 ctgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaacaccaa 194  Q
     |||||||||||||||||| |||||||    |||||| ||||||||||||| | |||||||||||||| ||||||    
T  37501952 ttgtgaaacttgcaattgcacataaacaattgaaactatagttgagactattgattggataacatcaatcaccaa 37501878  T

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Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 32925586 - 32925764
Alignment:
Q  18 accatccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaa--atagtattgtcgaatg 115  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||  ||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  32925586 accatccacattaagaaccattgtatcattatcatcactttgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgtcgaatg 32925685  T
Q  116 tcctctgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaacaccaa 194  Q
     || || | |||||||||||||||||||||| || ||||||||||||||||| | | |||||||| |||||||||||||    
T  32925686 cccgctctaaaacttgcaattgcgcataaacagctgaaactgtagttgagacaaccagttggataccatcaaacaccaa 32925764  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 34545859 - 34545984
Alignment:
Q  45 attatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgtcctctgtgaaacttgcaattgcgcataa 144  Q
    ||||||| |||||||||   | |||||||||||||||||| ||| ||||||||||||| ||||||||||||||  ||| ||||||||||||||||||| |    
T  34545859 attatcaccatgttgccggtatacttcatgagtgggcctaactagtgcggttgaaataatattgtcgaatgtcagctgcgaaacttgcaattgcgcatga 34545958  T
Q  145 actgcagaaactgtagttgagactat 170  Q
    || || |||| |||||||||||||||    
T  34545959 acagctgaaattgtagttgagactat 34545984  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 33293528 - 33293488
Alignment:
Q  20 catccacattaagaaccattgtatgattatcatcatgttgc 60  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  33293528 catccacattaagaaccattgtatcattaccatcatgttgc 33293488  T

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Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 36284455 - 36284278
Alignment:
Q  20 catccacattaagaaccattgtatgattatcatca---tgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgt 116  Q
    |||||| ||||||||||||| ||| ||||||||||   ||||||||||| |||||| |||||| |||| |||| |||||||||| | ||||||| |||||    
T  36284455 catccatattaagaaccattatatcattatcatcaccatgttgccaacatacttcacgagtggacctaactaaagcggttgaaacaatattgtcaaatgt 36284356  T
Q  117 cctctgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaacaccaa 194  Q
    || || ||||||||||||||| ||| |||  |  ||||| ||| ||||||||||| |||| ||| |||||||||||||    
T  36284355 ccgctatgaaacttgcaattgtgcaaaaatagatgaaaccgtatttgagactatcagttgaataccatcaaacaccaa 36284278  T

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Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 42346992 - 42347157
Alignment:
Q  19 ccatccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgtcc 118  Q
    ||||||||||| || ||| || ||| ||||||| |||| |||||||| |||||||||||||||||| || |   |||||||| | |||||| |||||| |    
T  42346992 ccatccacattgagtaccgttttatcattatcaccatgctgccaacatacttcatgagtgggcctaactcaactggttgaaacaatattgttgaatgtgc 42347091  T
Q  119 tctgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaa 187  Q
     |||||||||||||||||||| |||||||   ||||| ||||||||||||||  |||||||| ||||||    
T  42347092 actgtgaaacttgcaattgcgaataaact---gaaaccgtagttgagactattagttggataccatcaa 42347157  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 32331662 - 32331589
Alignment:
Q  121 tgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaacaccaa 194  Q
    |||||||||||||||||||| ||||| |||||||||| ||||  ||||||| |||||||| |||||||||||||    
T  32331662 tgtgaaacttgcaattgcgcgtaaacagcagaaactgcagttcggactatcagttggataccatcaaacaccaa 32331589  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 43190234 - 43190061
Alignment:
Q  22 tccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgtcctct 121  Q
    |||||||||||||| | || || |||||||   |||||||||||  ||||||||||||| ||| |||| |||| ||||| | || |||| ||||  | ||    
T  43190234 tccacattaagaacaagtgcatcattatcactgtgttgccaacatgcttcatgagtgggtctaactaaagcggctgaaacaatactgtcaaatgctcgct 43190135  T
Q  122 gtgaaacttgc-aattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaacaccaa 194  Q
    ||||||||||| || |||||| ||||  |  ||| |||||||  || |||| |||||||| |||||||||||||    
T  43190134 gtgaaacttgcaaactgcgcacaaacaacttaaaatgtagttaggagtatcagttggataccatcaaacaccaa 43190061  T

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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 10406395 - 10406225
Alignment:
Q  20 catccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggcctagctaatgcggttgaaatagtattgtcgaatgtcct 119  Q
    |||| |||||||||  |||||||| ||||||| |||| ||||| || ||||||||| ||| ||||  ||||||||||||||||||||| |||||| | |     
T  10406395 catctacattaagagtcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaatagtattctcgaatattcg 10406296  T
Q  120 ctgtgaaacttgcaattgcgcataaactgcagaaactgtagttgagactatcggttggataacatcaaaca 190  Q
     |||||||||| |||||| ||||||||    |||| ||||||||||||||| |||| |||| |||||||||    
T  10406295 ttgtgaaacttacaattgtgcataaacatttgaaaatgtagttgagactattggtttgataccatcaaaca 10406225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 3548949 - 3548884
Alignment:
Q  19 ccatccacattaagaaccattgtatgattatcatcatgttgccaacaaacttcatgagtgggccta 84  Q
    ||||| ||||||||||||||||||  |||||   ||||||||||||| ||||||||||||||||||    
T  3548949 ccatctacattaagaaccattgtaccattatttccatgttgccaacatacttcatgagtgggccta 3548884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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