View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9179_low_9 (Length: 347)
Name: NF9179_low_9
Description: NF9179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9179_low_9 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 10373967 - 10374273
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373967 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
10374066 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
10374067 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcaca |
10374166 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| | |
|
|
| T |
10374167 |
caattttcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgca |
10374266 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
10374267 |
ggctctt |
10374273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 10033947 - 10033639
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10033947 |
caaagggaatccattcattccaattgaccatgttgtcgaactttatacgctcaagggatcggaatggttggaaggaagaattagatcctttttcaatctg |
10033848 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
10033847 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctatgggtggaagtgtcata |
10033748 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||| |||| | ||| |||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||| | |
|
|
| T |
10033747 |
caatattcacaattagtgatgcgaagagataccatgttagaaaacaaagaatttcccaaccaactcggaaagcttgtcccaccatacaaacaaatattca |
10033648 |
T |
|
| Q |
319 |
ggctcttta |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
10033647 |
ggctcttta |
10033639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 10128872 - 10128564
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10128872 |
caaagggaatccattcattccaattgaccatgttgtcgaactttatatgctcaagggatcggaatggttggaaggaagaattagatcctttttcaatctg |
10128773 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
10128772 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctatgggtggaagtgtcata |
10128673 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||| |||| | || |||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||| | |
|
|
| T |
10128672 |
caatattcacaattagtgatgcgcagagataccatgttagaaaacaaagaatttcccaaccaactcggaaagcttgtcccaccatacaaacaaatattca |
10128573 |
T |
|
| Q |
319 |
ggctcttta |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
10128572 |
ggctcttta |
10128564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 9851686 - 9851397
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851686 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctg |
9851587 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
9851586 |
ggcataatagaactccaggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcaca |
9851487 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaag |
308 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
9851486 |
caattttcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaag |
9851397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 10519430 - 10519126
Alignment:
| Q |
21 |
aagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10519430 |
aagggaatccattcattccaattgagcatgttgtcgaacattatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctggg |
10519331 |
T |
|
| Q |
121 |
cataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacaca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10519330 |
cataatagaactccgggccaattgtctccaacatctccataccacatatttctaggtccttgagagaaggtaactgccctagggatggaagtgtcacaca |
10519231 |
T |
|
| Q |
221 |
atattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatatttagg |
320 |
Q |
| |
|
|| ||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||| ||||||| |||||||| ||| |
|
|
| T |
10519230 |
attttcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaaacaaatattcagg |
10519131 |
T |
|
| Q |
321 |
ctctt |
325 |
Q |
| |
|
||||| |
|
|
| T |
10519130 |
ctctt |
10519126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 9840808 - 9840519
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840808 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctg |
9840709 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
9840708 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctacgtccttgagagaaggtaactgccctagggatggaagtgtcaca |
9840609 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaag |
308 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| |||| ||||||||||| ||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
9840608 |
caattttcacaattactgatactgagagatacgatgttataaaacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaag |
9840519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 10432166 - 10432472
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| || ||||| ||||||| |
|
|
| T |
10432166 |
caaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaaggaagaattggagccttcatcaatctg |
10432265 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| || |||||||||| | |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10432266 |
gacaaaatagaactctgtgccaattgtctccaacatcttcataccacatatttgtaggtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
10432365 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10432366 |
caatattcacaattactgatacagagggataccatgtccgaaaacgaagaatttcccagccaactcggaaagcttgtaccatcatacaagcaaatattta |
10432465 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
10432466 |
ggctctt |
10432472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 10665473 - 10665167
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||| |||||||||||||||||| | || ||||| ||||||| |
|
|
| T |
10665473 |
caaagggaatccattcattccaatttggtatgttgtcgaattttatacactcaagggatggaaatggttggaaggaagaacttgagccttcctcaatctg |
10665374 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||| ||| | |||||||||| ||||| |
|
|
| T |
10665373 |
gacataatagaactccgggccaattgtctccaacatctccatgtcgcatatttctaggttcttgagagaaggtaacttcccaaggggtggaagtatcaca |
10665274 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| | |
|
|
| T |
10665273 |
caatattcacaattactgatacagagggataccatgttagaaaacgaagaatttcccaaccaacttggaaagcttgttccaccatacaagaaaatattca |
10665174 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
10665173 |
ggctctt |
10665167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 10090734 - 10090431
Alignment:
| Q |
22 |
agggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggc |
121 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||| |||||||| || | | |
|
|
| T |
10090734 |
agggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttctccctggac |
10090635 |
T |
|
| Q |
122 |
ataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaa |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | |||||||| ||||| || |||||||||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
10090634 |
ataatagaactccggaccaattgtctccaacatgttcataccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaa |
10090535 |
T |
|
| Q |
222 |
tattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatatttaggc |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | || |
|
|
| T |
10090534 |
tattcacaattactgatacagagggataccatgttagaaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaagcaaatattcaagc |
10090435 |
T |
|
| Q |
322 |
tctt |
325 |
Q |
| |
|
|||| |
|
|
| T |
10090434 |
tctt |
10090431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 10197617 - 10197314
Alignment:
| Q |
22 |
agggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggc |
121 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||| |||||||| || | | |
|
|
| T |
10197617 |
agggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttctccctggac |
10197518 |
T |
|
| Q |
122 |
ataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaa |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | |||||||| ||||| || |||||||||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
10197517 |
ataatagaactccggaccaattgtctccaacatgttcataccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaa |
10197418 |
T |
|
| Q |
222 |
tattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatatttaggc |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | || |
|
|
| T |
10197417 |
tattcacaattactgatacagagggataccatgttagaaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaagcaaatattcaagc |
10197318 |
T |
|
| Q |
322 |
tctt |
325 |
Q |
| |
|
|||| |
|
|
| T |
10197317 |
tctt |
10197314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 10582557 - 10582251
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||| ||||| ||||||||| | || |||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10582557 |
caaagggaagccatttattccaatttggtatattgtcgaattttatatactcaagggatggaaatggttggaaggaagaattagaaccttcttcaatctg |
10582458 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10582457 |
gacataatagaactccaggccaattgtctccaacatctccataccacatatttctaggtccttaagagaaggtaactgccctattggtggaagtgtcaca |
10582358 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||| ||||||||||| | |
|
|
| T |
10582357 |
caatattcacaattagtgatgcggagggataccatgttagaaaacgaagaatttcccaaccaactaggaaaacttgtcccgccatataagcaaatattca |
10582258 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
10582257 |
ggctctt |
10582251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 10361923 - 10362199
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
10361923 |
caaagggaatccattcattccaatttggcatgttgtcgaaatttatgcgctcaagggatggaaatggttggaaggaagaattagaaccatcttcaatctg |
10362022 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||| | |||||||| ||||| || | |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10362023 |
gacataatagaactccaggccaattgtctccaacatgttcataccacatatttttaggaccttcagagaaggtaactgccctaagggtggaagtatcaca |
10362122 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgt |
295 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10362123 |
caatattcacaattagtgatgcggagggataccatgttagaaaacgaagaatttcccaaccaactaggaaaacttgt |
10362199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 327
Target Start/End: Complemental strand, 10262642 - 10262337
Alignment:
| Q |
22 |
agggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg- |
120 |
Q |
| |
|
|||||| ||||||||||||||| ||| | ||| ||| |||||||||||||||||| | |||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
10262642 |
agggaagccattcattccaatttggcaagctgttgaattttatacgctcaagggattgaaatggttggaaggaagaacaagaaccttcttctc-cttgga |
10262544 |
T |
|
| Q |
121 |
cataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacaca |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
10262543 |
cataatagaactccggaccaattgtctccaacctcttcataccacatatttctaggtccttgagagaaggtaactgccctatgggtggaagtgtcataca |
10262444 |
T |
|
| Q |
221 |
atattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatatttagg |
320 |
Q |
| |
|
||||||||||||| |||| | || |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| || ||| |
|
|
| T |
10262443 |
atattcacaattagtgatgcgcagagataccatgttataaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaaacaaattttcagg |
10262344 |
T |
|
| Q |
321 |
ctcttta |
327 |
Q |
| |
|
||||||| |
|
|
| T |
10262343 |
ctcttta |
10262337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 11771181 - 11770875
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||| || |||||| |||| |||||||| |||||||||||||||||||| || ||| |||| || |
|
|
| T |
11771181 |
caaaaggaagccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttggaaggaagaattggaacctacttctccctg |
11771082 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||| || | |||||| ||||| ||| |||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
11771081 |
gacataatagaacttcgaacaaattgtatccaatatcatcataccacatatttctagctccttgagagaaggtagctgccctatgggtggaagtgtcaca |
11770982 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||||||| | |
|
|
| T |
11770981 |
caatattcacaattactaatacggagggataccatgttagaaaatgaagaatttcccagccaactcggaaagcttgtcccaccatacaagcaaatattca |
11770882 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
11770881 |
ggctctt |
11770875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 11780104 - 11780410
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| || |||||| |||| |||||||| |||||||||||||||||||| || ||| |||| || |
|
|
| T |
11780104 |
caaagggaaaccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaatggttggaaggaagaattggaacctacttctccctg |
11780203 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||| || | |||||| ||||||||| |||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
11780204 |
gacataatagaacttcgaacaaattgtatccaacatcatcataccacatatttctaactccttgagagaaggtagctgccctatgggtggaagtgtcaca |
11780303 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| |||| |||||||| |||||| ||||||||||| ||| |||||||||||||||| | |
|
|
| T |
11780304 |
caatattcacaattactaatacggagggataccatgtttgaaaatgaaggatttcccagccaacttggaaagcttgtcccaccatacaagcaaatattca |
11780403 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
11780404 |
ggctctt |
11780410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 10079357 - 10079051
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
10079357 |
caaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaagaaagattcagagccttcttcaatctg |
10079258 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||| ||||| | ||||||||| ||||| |
|
|
| T |
10079257 |
gacataatagaactccgggccaattgtctccaacatcttcattccaaatatttctaggtccttgagagaaggtagttgcccaagtggtggaagtatcaca |
10079158 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||| | |||| |||||||||| || |||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||| | |
|
|
| T |
10079157 |
caatattcacaatcagtgattacgagggataccaagttacaaaacgaagaatttcctaaccaactcgaaaagcttgtcccaccatacaagcaaatattca |
10079058 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
| ||||| |
|
|
| T |
10079057 |
gactctt |
10079051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 10186327 - 10186021
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
10186327 |
caaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaagaaagattcagagccttcttcaatctg |
10186228 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||| ||||| | ||||||||| || || |
|
|
| T |
10186227 |
gacataatagaactccgggccaattgtctccaacatcttcattccaaatatttctaggtccttgagagaaggtagttgcccaagtggtggaagtatcgca |
10186128 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||||||||||||| | |||| ||||| |||| || |||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||| | |
|
|
| T |
10186127 |
caatattcacaatcagtgattacgagggacaccaagttacaaaacgaagaatttcctaaccaactcgaaaagcttgtcccaccatacaagcaaatattca |
10186028 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
| ||||| |
|
|
| T |
10186027 |
gactctt |
10186021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 10502530 - 10502257
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
|||||| || |||||| |||||||| |||||||| || |||||| ||||||||| || ||||||||||||||||||| ||| |||||||| | |
|
|
| T |
10502530 |
caaaggaaagccattccttccaatttggcatgttgaaaaatgttatacactcaagggagggaaatggttggaaggaagaatcagaaccttcttctac--- |
10502434 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| || |||||||||| ||||||||| ||||||| || |||| | ||| || ||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
10502433 |
gacacaatagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcaca |
10502334 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgt |
295 |
Q |
| |
|
||||||||||| ||| |||| | ||||||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
10502333 |
caatattcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaaccaatttggaaagcttgt |
10502257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 325
Target Start/End: Complemental strand, 10530552 - 10530288
Alignment:
| Q |
61 |
ttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctcca |
159 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| || |||||| | |||||| || |||||||||| | ||||||| ||||||| |||| || |
|
|
| T |
10530552 |
ttatacgctcaagggacggaaatggttggaaggaagaatttgaaccttctcct-tcttggacacaatagaactctgagccaattctctccaatatcttca |
10530454 |
T |
|
| Q |
160 |
taccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccga |
259 |
Q |
| |
|
|| || ||||| || |||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||| ||| | ||| || ||||||| | |
|
|
| T |
10530453 |
tatcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcacaattatcgatgcgaagagacaccatgttata |
10530354 |
T |
|
| Q |
260 |
aaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatatttaggctctt |
325 |
Q |
| |
|
|||| |||| ||||| | |||| | ||||| ||||| || ||||||||| ||||| |||||||| |
|
|
| T |
10530353 |
aaacaaagagtttccgacccaatttggaaaacttgtcccgccatacaagccaatatgaaggctctt |
10530288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 233
Target Start/End: Complemental strand, 10679343 - 10679171
Alignment:
| Q |
61 |
ttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctcca |
159 |
Q |
| |
|
|||||| ||||||||| || |||||||||||||||||||| || |||||| | |||||| || |||||||||| | ||||||| ||||| | |||| || |
|
|
| T |
10679343 |
ttatacactcaagggacggaaatggttggaaggaagaatttgaaccttctcct-tcttggacacaatagaactctgagccaattctctccgatatcttca |
10679245 |
T |
|
| Q |
160 |
taccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaatta |
233 |
Q |
| |
|
|| || ||||| || |||||| |||||||||| |||||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
10679244 |
tatcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcagaatta |
10679171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 13334697 - 13334566
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||||||||||||||| |||||| | ||| ||||||| |||||| ||| || ||| |
|
|
| T |
13334697 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
13334598 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaa |
307 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |
|
|
| T |
13334597 |
aaccaactcggaaagcttgttccaccatacaa |
13334566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 13162773 - 13162642
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||||||||||||||| |||||| | ||| ||||||| |||||| ||| || ||| |
|
|
| T |
13162773 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
13162674 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaa |
307 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| |
|
|
| T |
13162673 |
aaccaactcgggaagcttgttccaccatacaa |
13162642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 13345876 - 13345745
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||||||||||||||| |||||| | ||| ||||||| |||||| | | || ||| |
|
|
| T |
13345876 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaatggatcaccc |
13345777 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaa |
307 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |
|
|
| T |
13345776 |
aaccaactcggaaagcttgtcccaccatacaa |
13345745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 13172821 - 13172688
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| | ||||||||| ||||||||||||||||| |||||| | ||| ||||||| ||||| ||| || ||| |
|
|
| T |
13172821 |
gtccttgagagaaggtagttgacctagtgatggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaaaaaaggatcaccc |
13172722 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaagc |
309 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |
|
|
| T |
13172721 |
aaccaactcggaaagcttgtcccaccatacaagc |
13172688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 11147082 - 11147265
Alignment:
| Q |
125 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatat |
224 |
Q |
| |
|
||||||||| || |||||||||||||| || | |||||| | ||| || |||||||||||||| || || |||| ||||||||||||||||||||| |
|
|
| T |
11147082 |
atagaactctggaccaattgtctccaatatatacatacctcttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacacaatat |
11147181 |
T |
|
| Q |
225 |
tcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaag |
308 |
Q |
| |
|
|||||| || | || || ||||||| ||||| ||||||| |||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
11147182 |
ccacaatgttgaattgacagtgacaccatgttagaaaatgaagaatctcccaaccaacttggaaagcttgtcccaccatacaag |
11147265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 295
Target Start/End: Original strand, 11129257 - 11129427
Alignment:
| Q |
125 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatat |
224 |
Q |
| |
|
||||||||| || |||||||||||||| || |||||| | ||| || |||||||||||||| || || |||| ||||||||||||||||||||| |
|
|
| T |
11129257 |
atagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacacaatat |
11129356 |
T |
|
| Q |
225 |
tcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgt |
295 |
Q |
| |
|
|||||| || ||||| || ||||||| ||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
11129357 |
cgacaattttctatgcaaagtgacaccatgttagaaaatgaagaatctcccaaccaactaggaaaacttgt |
11129427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 308
Target Start/End: Original strand, 11158324 - 11158428
Alignment:
| Q |
204 |
ggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcat |
303 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || | ||| || ||||||| ||||| ||||||| |||||||||||| ||||||||||| ||| ||| |
|
|
| T |
11158324 |
ggtggaagtgttacacaatatccacaattttctatgctaagtgacaccatgttagaaaatgaagaatctcccaaccaacttggaaagcttgtcccaccat |
11158423 |
T |
|
| Q |
304 |
acaag |
308 |
Q |
| |
|
||||| |
|
|
| T |
11158424 |
acaag |
11158428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 295
Target Start/End: Original strand, 11244854 - 11245024
Alignment:
| Q |
125 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatat |
224 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||| | ||| || ||||||||| |||||| | ||||| || || ||||||||||||||| |
|
|
| T |
11244854 |
atagaactccaggccaattgtctccaatatcgacatacctcctatacttagatccttgagacaaggtagtttccctactggaggtagtgtcacacaatat |
11244953 |
T |
|
| Q |
225 |
tcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgt |
295 |
Q |
| |
|
|| ||||| ||| ||||| || ||||||| ||||| ||||||| |||||| |||| ||||| ||||| |
|
|
| T |
11244954 |
gcaaaattatcgatgcaaagagaaaccatgttagaaaatgaagaatctcccaatcaacatggaaaacttgt |
11245024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 55724 - 56030
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55724 |
caaagggaatccattcattccaattgaacatgttgtcgaactttataaactcaagggataggaatggttggaaggaagaattagatccttattcaatctg |
55823 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
55824 |
ggcataatagaactccgggccaattgtctccaacatctccataccacatatttctaagtccttgagagaaggtaactgccctagggatggaagtgtcaca |
55923 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||||| | |
|
|
| T |
55924 |
caattttcacaattactgatactgagagataccatgttataaaatgaagaacttcccaaccaactcggaaagcttgtcccaccatacaaacaaatattca |
56023 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
|||||| |
|
|
| T |
56024 |
agctctt |
56030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 26908835 - 26908529
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| || |||||||||||||||||| | ||||||||||||||| |||| || ||||| ||||||| |
|
|
| T |
26908835 |
caaagggaagccattgattccaatttggcatgttgttaaattttatacgctcaagggattgaaatggttggaaggaaaaattggagccttcctcaatctg |
26908736 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| |||||||| | || |||||||||||||||||||| | ||||||| ||||||||| |||||||||| |||||| || |||| |||||||||||| |
|
|
| T |
26908735 |
gacataatagtaatctgggccaattgtctccaacattttcataccatgtatttctaggtccttgagaaaaggtagttgtcctaggggtggaagtgttggg |
26908636 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatattta |
318 |
Q |
| |
|
||| ||||||||||| | || |||||| ||||| | ||||| ||||| | ||||||||||||||| || ||||| ||| |||||||| ||| || | |
|
|
| T |
26908635 |
caaaattcacaattagttatgtgaagggacaccatcttagaaaatgaagagtctcccaaccaactcgggaaacttgtcccaccatacaagtcaattttca |
26908536 |
T |
|
| Q |
319 |
ggctctt |
325 |
Q |
| |
|
||||||| |
|
|
| T |
26908535 |
ggctctt |
26908529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 44955847 - 44956105
Alignment:
| Q |
67 |
gctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccataccac |
165 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || |||||| | ||||| |||| |||||||||||||| ||| |||||||| ||| ||||||| |
|
|
| T |
44955847 |
gctcaagggacgggaatggttggaaggaggaattggaaccttctcctg-cttggacatagtagaactccgggcctattatctccaacttcttcataccat |
44955945 |
T |
|
| Q |
166 |
gtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacga |
265 |
Q |
| |
|
|||||||| ||||||||| |||| | ||||| | ||||||||||| |||||||| | ||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
44955946 |
atatttctagatccttgagaaaaggcagttgccccagcggtggaagtgttacacaataccctcaattactgatgcaaagggacgccatgttagaaaacga |
44956045 |
T |
|
| Q |
266 |
agaatttcccaaccaactcggaaagcttgtaccatcatacaagcaaatatttaggctctt |
325 |
Q |
| |
|
| ||| |||||||||| | ||||||||||| ||| |||| ||| ||| ||||| ||||| |
|
|
| T |
44956046 |
aaaatctcccaaccaatttggaaagcttgtcccaccatagaagtcaatttttagactctt |
44956105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 11486982 - 11486693
Alignment:
| Q |
19 |
caaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctt |
118 |
Q |
| |
|
|||| |||| |||||| |||||||| |||||||| | || |||||| |||||||||| ||||||||||||||||||||||| ||| | | ||| |
|
|
| T |
11486982 |
caaaaggaagccattccttccaattttgcatgttgacaaatgttatacattcaagggatgaaaatggttggaaggaagaattagaagcttttccttcctt |
11486883 |
T |
|
| Q |
119 |
ggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcaca |
218 |
Q |
| |
|
| || |||||||||| |||||||||||||||||||| |||| | ||| | | ||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
11486882 |
gacacaatagaactcttggccaattgtctccaacatcaacatattccttatactcagtttcttgagagatggtagttgccctagcggtggaagtgtcatg |
11486783 |
T |
|
| Q |
219 |
caatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcatacaag |
308 |
Q |
| |
|
||||||||||||| | |||| ||||||| ||||| | ||||| ||||||| ||||||||| ||||||| ||||| ||| |||||||| |
|
|
| T |
11486782 |
caatattcacaatcattgatgtaaagggacaccattttagaaaatgaagaatcacccaaccaattcggaaaacttgtcccaccatacaag |
11486693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 17851047 - 17851333
Alignment:
| Q |
18 |
acaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatct |
117 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||| ||| ||| || ||||||||| || |||||||| ||||||||||| || |||||| | || |
|
|
| T |
17851047 |
acaaagggaagccattccttccaatttggcatgttgcgaaacattaaacactcaagggacggaaatggttgaaaggaagaattggaaccttctcctgcct |
17851146 |
T |
|
| Q |
118 |
tggcataatagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcac |
217 |
Q |
| |
|
| ||| ||||||||| || || ||| ||||||| ||||||||||||| ||| || |||||| |||||||||| |||||| | ||||||||||||| |
|
|
| T |
17851147 |
ggacatgatagaactctggaccgattctctccaatatctccataccacaaattagtaggtccttcagagaaggtagctgccccagcggtggaagtgtcat |
17851246 |
T |
|
| Q |
218 |
acaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagcttgtaccatcata |
304 |
Q |
| |
|
|||| ||||| ||||||||| | | | | || |||| ||||||||||||| ||| | |||||| ||||| ||||| ||| |||| |
|
|
| T |
17851247 |
gcaatgttcaccattactgatgcccaagaacacgatgttagaaaacgaagaatctcctagccaacttggaaaacttgtcccaccata |
17851333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 144215 - 144346
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||||||||||||||| |||||| | ||| ||||||| |||||| ||| || ||| |
|
|
| T |
144215 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
144314 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaa |
307 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |
|
|
| T |
144315 |
aaccaactcggaaagcttgttccaccatacaa |
144346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 152520 - 152651
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||||||||||||||| |||||| | ||| ||||||| |||||| ||| || ||| |
|
|
| T |
152520 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
152619 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaa |
307 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| |
|
|
| T |
152620 |
aaccaactcgggaagcttgttccaccatacaa |
152651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 309
Target Start/End: Original strand, 134167 - 134300
Alignment:
| Q |
176 |
gtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacaaagggataccatgtccgaaaacgaagaatttccc |
275 |
Q |
| |
|
||||||||||||||||| || |||| | ||||||||| ||||||||||||||||| |||||| | ||| ||||||| ||||| ||| || ||| |
|
|
| T |
134167 |
gtccttgagagaaggtagttgacctagtgatggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaaaaaaggatcaccc |
134266 |
T |
|
| Q |
276 |
aaccaactcggaaagcttgtaccatcatacaagc |
309 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |
|
|
| T |
134267 |
aaccaactcggaaagcttgtcccaccatacaagc |
134300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 293
Target Start/End: Complemental strand, 29838481 - 29838313
Alignment:
| Q |
125 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatat |
224 |
Q |
| |
|
||||||||| |||||||| |||| ||||||| ||||||| || || |||||||||||||| || ||||||| | ||||||||| | |||||| |
|
|
| T |
29838481 |
atagaactctgggccaatagtcttcaacatcctcataccatctaaccttaggtccttgagagaagatagatgccctagtgatggaagtgtaaggcaatat |
29838382 |
T |
|
| Q |
225 |
tcacaattactgatacaaagggataccatgtccgaaaacgaagaatttcccaaccaactcggaaagctt |
293 |
Q |
| |
|
|||||||||||||| | |||| | ||||||| | || ||||||| |||||||||||| ||||||||| |
|
|
| T |
29838381 |
tcacaattactgatgctaaggtacaccatgttaaagaatgaagaatctcccaaccaacttggaaagctt |
29838313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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