View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9180_high_3 (Length: 398)
Name: NF9180_high_3
Description: NF9180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9180_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 33836420 - 33836044
Alignment:
| Q |
7 |
tttggagttacctagttacagagattctaatcctagttttagtatctaatcaaaaccaaaaacaaaagtgaagggcctttttcacgatgcatgttgaaaa |
106 |
Q |
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| T |
33836420 |
tttggagttacctagttactgagattctaatcctagttttagtatctaatcaaaaccaaaaacaaaagtgaagggcctttttcatgatgcatgttggaaa |
33836321 |
T |
|
| Q |
107 |
agggttcaaaaactacatcccctttttaacacggtcaagtaaaaagcgacgacgaatctctatatgcttagtctttgaatgtaaaactcgattcttagtc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33836320 |
agggttcaaaaactacatcccctttttaacacggtcaagtaaaaagcgacgacgaatctctatatgcttagtctttgaatgtaaaactcgattcttagtc |
33836221 |
T |
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| Q |
207 |
aagttaatggcacttgtgttatcgtactttattggagtatgatataattttaaatcagagtctagaaaatgttgtttgaaccagtgaatttggatgcaaa |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33836220 |
aagttaatggcaattgtgttatcgtactttattggagtatgatataattttaaatcagagtctagaaaatgttgtttgaaccagtgaatttggacgcaaa |
33836121 |
T |
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| Q |
307 |
tatactttgaaatatgttgtctataagccataagataaagtaaggaaccaaatatactttgaaattgtgttacctct |
383 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33836120 |
tacactctgaaatatgttgtctataagccataagataaagtaaggaaccaaatatactttgaaattgtgttacctct |
33836044 |
T |
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