View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9180_low_10 (Length: 222)
Name: NF9180_low_10
Description: NF9180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9180_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52343892 - 52344116
Alignment:
| Q |
1 |
tcaaaaagggagcaggtaacgtattagcttcacttaagtttgctgttgttgaatctcttctgcctaatagtacattccatctttgtccaccaagctatac |
100 |
Q |
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| T |
52343892 |
tcaaaaagggagcaggtaacgtattagcttcacttaagtttgctgttgttgaatctcttctgcctaatagtacattccatctttgtccaccaagctatac |
52343991 |
T |
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| Q |
101 |
ataatttaatcttagttattatcaaattaattaataagaatattgtatag---aaatgtgtttgtaatgtatatatttacctcagcaacaccgtccctag |
197 |
Q |
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| T |
52343992 |
ataatttaatcttagttattatcaaattaattaataagaatattgtatagatcaaatgtgtttgtaatgtatatatttacctcagcaacaccgtccctag |
52344091 |
T |
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| Q |
198 |
cagcaagggctaagatgtcagaaca |
222 |
Q |
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| T |
52344092 |
cagcaagggctaagatgtcagaaca |
52344116 |
T |
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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 9155341 - 9155405
Alignment:
| Q |
35 |
taagtttgctgttgttgaatctcttctgcctaatagtacattccatctttgtccaccaagctata |
99 |
Q |
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| T |
9155341 |
taagcttgctgttgttgaatctcttctgcctaatggtacattccagctttgtccgccaagctata |
9155405 |
T |
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