View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9180_low_2 (Length: 588)

Name: NF9180_low_2
Description: NF9180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9180_low_2
NF9180_low_2
[»] chr7 (9 HSPs)
chr7 (1-346)||(7712759-7713097)
chr7 (444-542)||(27218589-27218687)
chr7 (422-542)||(23887658-23887778)
chr7 (422-542)||(23898834-23898954)
chr7 (507-547)||(41805288-41805328)
chr7 (507-548)||(8752926-8752967)
chr7 (507-548)||(17056098-17056139)
chr7 (507-548)||(25018848-25018889)
chr7 (408-484)||(4077901-4077977)
[»] chr3 (17 HSPs)
chr3 (384-546)||(18381629-18381783)
chr3 (396-542)||(55367185-55367330)
chr3 (507-569)||(48930274-48930336)
chr3 (443-542)||(19875818-19875917)
chr3 (507-548)||(52250654-52250695)
chr3 (409-484)||(47537901-47537976)
chr3 (443-493)||(7581643-7581693)
chr3 (394-542)||(31675506-31675654)
chr3 (384-548)||(34829962-34830126)
chr3 (446-492)||(36731534-36731580)
chr3 (507-548)||(6825391-6825432)
chr3 (446-519)||(29310006-29310079)
chr3 (408-493)||(30166775-30166860)
chr3 (507-548)||(44888473-44888514)
chr3 (394-542)||(31920768-31920916)
chr3 (408-516)||(40513155-40513263)
chr3 (408-484)||(50544856-50544932)
[»] chr8 (9 HSPs)
chr8 (408-547)||(12341137-12341276)
chr8 (470-541)||(29721403-29721474)
chr8 (416-547)||(36025091-36025222)
chr8 (408-514)||(7452955-7453061)
chr8 (507-548)||(12332417-12332458)
chr8 (507-548)||(36492950-36492991)
chr8 (408-547)||(37165552-37165691)
chr8 (409-492)||(45255267-45255350)
chr8 (436-484)||(17659464-17659512)
[»] chr1 (9 HSPs)
chr1 (422-541)||(19014429-19014548)
chr1 (384-542)||(1247993-1248151)
chr1 (507-548)||(45270810-45270851)
chr1 (409-484)||(26721266-26721341)
chr1 (443-542)||(28358465-28358563)
chr1 (408-519)||(32352741-32352852)
chr1 (507-548)||(22191312-22191353)
chr1 (436-489)||(39430905-39430958)
chr1 (443-548)||(52692040-52692145)
[»] chr6 (11 HSPs)
chr6 (443-542)||(19350519-19350618)
chr6 (408-542)||(29976439-29976573)
chr6 (507-548)||(10362702-10362743)
chr6 (507-548)||(34434829-34434870)
chr6 (408-537)||(15674409-15674538)
chr6 (435-548)||(32186252-32186365)
chr6 (409-484)||(11060294-11060369)
chr6 (468-542)||(10919955-10920029)
chr6 (435-489)||(11469196-11469250)
chr6 (443-548)||(25350791-25350896)
chr6 (384-543)||(13563343-13563503)
[»] chr4 (7 HSPs)
chr4 (410-542)||(2072115-2072247)
chr4 (409-484)||(10562765-10562840)
chr4 (203-324)||(4607257-4607379)
chr4 (404-477)||(56336928-56337000)
chr4 (446-519)||(20675620-20675693)
chr4 (507-548)||(38296275-38296316)
chr4 (514-542)||(52617402-52617430)
[»] chr5 (7 HSPs)
chr5 (409-484)||(7000219-7000294)
chr5 (409-484)||(20208152-20208227)
chr5 (507-548)||(4297839-4297880)
chr5 (507-548)||(41590665-41590706)
chr5 (453-533)||(22174470-22174550)
chr5 (446-492)||(39351897-39351943)
chr5 (443-492)||(27529482-27529531)
[»] scaffold0048 (1 HSPs)
scaffold0048 (435-542)||(63757-63864)
[»] chr2 (11 HSPs)
chr2 (438-492)||(31071268-31071322)
chr2 (507-548)||(26146784-26146825)
chr2 (507-548)||(43310828-43310869)
chr2 (441-488)||(22863941-22863988)
chr2 (446-492)||(18697840-18697886)
chr2 (443-485)||(29895261-29895303)
chr2 (220-285)||(11879014-11879079)
chr2 (442-479)||(24738861-24738898)
chr2 (406-519)||(26894041-26894154)
chr2 (406-519)||(26899480-26899593)
chr2 (443-492)||(42183230-42183279)
[»] scaffold0189 (1 HSPs)
scaffold0189 (462-542)||(6663-6743)
[»] scaffold0179 (2 HSPs)
scaffold0179 (409-484)||(8165-8240)
scaffold0179 (409-484)||(13099-13174)
[»] scaffold0061 (1 HSPs)
scaffold0061 (507-545)||(55234-55272)
[»] scaffold0017 (1 HSPs)
scaffold0017 (507-545)||(143362-143400)
[»] scaffold0155 (1 HSPs)
scaffold0155 (443-492)||(32790-32839)
[»] scaffold0016 (1 HSPs)
scaffold0016 (507-548)||(28343-28384)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 7713097 - 7712759
Alignment:
Q  1 tgtttaaagatctagatcgtttaataatggtttgtaatagctaacgacaacagtttttctacttatctaaaattaagtattgttttaagtgtgtaatatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7713097 tgtttaaagatctacatcgtttaataatggtttgtaatagctaacgacaacagtttttctacttatctaaaattaagtattgttttaagtgtgtaatatt 7712998  T
Q  101 tgttatagtattatgttttaaattatccgtgaatgaatatgcaatacttcataaagtattcgtgtcatgcatcatgaatcacaaagtcataatgaatcac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  7712997 tgttattgtattatgttttaaattatccgtgaatgaatatgcaatacttcataaagtattcgtgtcatgcat-----atcacaaagtcataatgaatcac 7712903  T
Q  201 tatgttttaactcgtttgttttatgtttaatcttgcgattattttaaaatatacgaacgcatagaaatgatcaaagaatatttttgaatttaagtacatc 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |    
T  7712902 tatgttttaactcgtttgttttatgtttaatcttgcgattcttttaaaatatacgaaagcaaagaaatgatcagagaatatttttgaatttaagtacagc 7712803  T
Q  301 tactaaccaaaaataggctaccttttttatatttcaatatgttgaa 346  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||    
T  7712802 tactaacc-aaaataggcta-cttttttatatttcaatgtgttgaa 7712759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 542
Target Start/End: Original strand, 27218589 - 27218687
Alignment:
Q  444 aatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    ||||||||||||||||| ||||||| |||||||||  | ||||| | ||   |||||| ||  |||||||||| |||||||||||||||||||||||||    
T  27218589 aatttaatttagctttgttaggtaaatggtgttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggagg 27218687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 542
Target Start/End: Complemental strand, 23887778 - 23887658
Alignment:
Q  422 ttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttgg 521  Q
    |||||| | ||| ||||||| || |||||| |||||||| |||| || |||||||||| |||| |||| |||  ||||| |||  |||||||||||||||    
T  23887778 ttgggggtcagacagttgagggagtttaatatagctttgttaggaaaatggtgttggaggatgctggtagacagaggtgagttctggtatagggttttgg 23887679  T
Q  522 tggcgagatatggtgaggagg 542  Q
     || ||| || ||||||||||    
T  23887678 cggtgaggtacggtgaggagg 23887658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 542
Target Start/End: Complemental strand, 23898954 - 23898834
Alignment:
Q  422 ttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttgg 521  Q
    |||||| | ||| ||||||| || |||||| |||||||| |||| || |||||||||| |||| |||| |||  ||||| |||  |||||||||||||||    
T  23898954 ttgggggtcagacagttgagggagtttaatatagctttgttaggaaaatggtgttggaggatgctggtagacagaggtgagttctggtatagggttttgg 23898855  T
Q  522 tggcgagatatggtgaggagg 542  Q
     || ||| || ||||||||||    
T  23898854 cggtgaggtacggtgaggagg 23898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 41805288 - 41805328
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggg 547  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  41805288 ggtatagggtgttggtggcgagatatggtgaggaggttggg 41805328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 8752926 - 8752967
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  8752926 ggtatagggtgctggtggcgagatatggtgaggaggctggga 8752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 17056139 - 17056098
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||| | |||||||||||||||||||    
T  17056139 ggtatagggtgttggtggcgcgttatggtgaggaggatggga 17056098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 25018848 - 25018889
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| |||||||| |||||||||||||||| |||||    
T  25018848 ggtatagggtgttggtggcaagatatggtgaggaggctggga 25018889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 4077977 - 4077901
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    |||||| ||| ||||||||| ||||| ||||||  ||||||||||| |||||  |||| ||||| ||||||| ||||    
T  4077977 aggagtttggaggtttgggggtgagacagttgaaggaatttaatttggctttcttaggaaagtgatgttggaggatg 4077901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 384 - 546
Target Start/End: Complemental strand, 18381783 - 18381629
Alignment:
Q  384 cttggagctatgtttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgat 483  Q
    ||||||||||||||||||| ||| |||||||| |||||        |||| |||||||||| ||||||||||||||||||||||||||||||||||  ||    
T  18381783 cttggagctatgtttgttctcgaaaggagtataggggt--------gagacagttgagagactttaatttagctttgctaggtaagtggtgttggagaat 18381692  T
Q  484 gttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggaggatgg 546  Q
    |||||||||   ||| |||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  18381691 gttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatgg 18381629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 542
Target Start/End: Complemental strand, 55367330 - 55367185
Alignment:
Q  396 tttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgacta 495  Q
    ||||||| ||| ||||||||||||||| ||||| |||  ||||||  ||||||||| | || ||| |||| || |||||||||| |||||| |||||       
T  55367330 tttgttcacgaaaggagtatgggggttgggggt-gaggaagttgaaggaatttaatcttgcgttgttaggaaaatggtgttggaggatgttagttgatag 55367232  T
Q  496 aggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    |||||||||  |||||| ||||||| | |||||||||||||||||||    
T  55367231 aggtgggttgtggtataaggttttgttagcgagatatggtgaggagg 55367185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 507 - 569
Target Start/End: Complemental strand, 48930336 - 48930274
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatgggaagttagaagtaaggggctgga 569  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || ||  |||||||||    
T  48930336 ggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctgga 48930274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 19875917 - 19875818
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    |||||||||||||||||| |  |||| |||||||||  | ||||| | ||   |||||||||  |||||||||| |||||||||||||||||||||||||    
T  19875917 gaatttaatttagctttgatgagtaaatggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggagg 19875818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 52250654 - 52250695
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  52250654 ggtatagggtgttggtggcgagatatggtgaggaggatggga 52250695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 47537976 - 47537901
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| |||||  ||||| |||||||||||| |||||| |||||||||| ||||||| ||||    
T  47537976 ggagtttggaggtttgggggtgagacggttgaaagaatttaatttggctttgttaggtaagtgttgttggaggatg 47537901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 493
Target Start/End: Original strand, 7581643 - 7581693
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgac 493  Q
    ||||||||||||||||| ||||| |||||| |||||| |||||||||||||    
T  7581643 gaatttaatttagctttactagggaagtggagttggaggatgttggttgac 7581693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 542
Target Start/End: Complemental strand, 31675654 - 31675506
Alignment:
Q  394 tgtttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgac 493  Q
    ||||||||  ||| |||||||||| || || ||| ||||| ||||||| || |||||    |||||| ||||||| |||||||||   |||||||| ||     
T  31675654 tgtttgtttacgaaaggagtatggagggttaggggtgagacagttgagggagtttaaccatgctttgttaggtaaatggtgttggcgaatgttggtggat 31675555  T
Q  494 taaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
      |||||| ||  ||||||||||  |||||| |||||||||||||||||    
T  31675554 agaggtggtttttggtatagggtgctggtggtgagatatggtgaggagg 31675506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 548
Target Start/End: Complemental strand, 34830126 - 34829962
Alignment:
Q  384 cttggagctatgtttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgat 483  Q
    ||||||||| ||||||||  ||  |||||||||| || |||||| ||||  |||||   |||||||||   |||||| ||||||| |||||||||  |||    
T  34830126 cttggagctctgtttgtttacgtaaggagtatggagggttgggggtgaggaagttgcatgaatttaatagtgctttgttaggtaaatggtgttggcggat 34830027  T
Q  484 gttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||| ||   || ||||||| ||||||||||  |||  ||| ||||||||||| | |||||||    
T  34830026 gttggtggatatagttgggttatggtatagggtactggcagcgcgatatggtgagaaagatggga 34829962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 36731580 - 36731534
Alignment:
Q  446 tttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    |||||| |||||||| |||| ||||||||||||| ||||||||||||    
T  36731580 tttaatgtagctttgttaggaaagtggtgttggaggatgttggttga 36731534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 6825432 - 6825391
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||| | |||||||||||||||||||    
T  6825432 ggtatagggtgttggtggcgcggtatggtgaggaggatggga 6825391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 519
Target Start/End: Complemental strand, 29310079 - 29310006
Alignment:
Q  446 tttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggtttt 519  Q
    ||||||||||| ||| |||| || |||||||||  ||||||||| ||| ||||||| ||  |||||||||||||    
T  29310079 tttaatttagcattgttaggaaaatggtgttggcggatgttggtggacaaaggtggtttgtggtatagggtttt 29310006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 30166775 - 30166860
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgac 493  Q
    ||||| |||| ||||||||| ||||  ||||||  |||||||||   |||||| ||||||| |||||||||  |||||||||||||    
T  30166775 aggagaatggaggtttgggggtgaggcagttgaaggaatttaatagtgctttgttaggtaaatggtgttggcggatgttggttgac 30166860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 44888514 - 44888473
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||| | |||||||||||||||||||    
T  44888514 ggtatagggtgttggtggcgcgttatggtgaggaggatggga 44888473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 542
Target Start/End: Original strand, 31920768 - 31920916
Alignment:
Q  394 tgtttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgac 493  Q
    ||||||||  ||| |||||||||| || || ||  ||||| ||||||| || |||||    |||||| ||||||| |||||||||   |||||||| ||     
T  31920768 tgtttgtttacgaaaggagtatggagggttaggagtgagacagttgagggagtttaaccatgctttgttaggtaaatggtgttggcgaatgttggtggat 31920867  T
Q  494 taaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
      |||||| ||  ||||||||||  |||||| |||||||||||||||||    
T  31920868 agaggtggtttttggtatagggtgctggtggtgagatatggtgaggagg 31920916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 516
Target Start/End: Original strand, 40513155 - 40513263
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    |||||||||||||||||||| ||||  |||||   || ||||||   |||||| ||||||| |||||||||  ||||||||| ||   |||||| ||| |    
T  40513155 aggagtatgggggtttgggggtgaggaagttgcaggattttaatagtgctttgttaggtaaatggtgttggcggatgttggtggatagaggtggtttatg 40513254  T
Q  508 gtatagggt 516  Q
    |||||||||    
T  40513255 gtatagggt 40513263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 50544932 - 50544856
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    |||||| ||| ||||| ||| ||| | ||||||  ||||||||||| |||||| |||| ||||||||||||| ||||    
T  50544932 aggagtctggaggtttaggggtgacacagttgaaggaatttaatttggctttgttaggaaagtggtgttggaggatg 50544856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 408 - 547
Target Start/End: Complemental strand, 12341276 - 12341137
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    ||||| |||||||||||||| ||||| ||||||  ||||||||| | |||||| |||| ||||||||||||| |||||| || ||   ||| |||||  |    
T  12341276 aggagaatgggggtttgggggtgagacagttgaaggaatttaatatggctttgttaggaaagtggtgttggaggatgttagtggatagaggagggttgtg 12341177  T
Q  508 gtatagggttttggtggcgagatatggtgaggaggatggg 547  Q
    || ||||||  |||||||||| ||||||||||||| ||||    
T  12341176 gtttagggtactggtggcgaggtatggtgaggaggctggg 12341137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 29721403 - 29721474
Alignment:
Q  470 tggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggag 541  Q
    |||||||||| |||||| |||||  ||||||||||  |||||||||||||||||||||||||||||||||||    
T  29721403 tggtgttggaggatgttagttgatcaaggtgggttgtggtatagggttttggtggcgagatatggtgaggag 29721474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 416 - 547
Target Start/End: Complemental strand, 36025222 - 36025091
Alignment:
Q  416 gggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtataggg 515  Q
    ||||| |||||| ||||  ||||||| ||||||||| | |||||  ||||  | |||||||||  ||||||||| ||   ||| |||||| ||||||| |    
T  36025222 gggggattgggggtgaggcagttgagtgaatttaatattgctttattaggataatggtgttggcggatgttggtggatagaggagggttatggtatagag 36025123  T
Q  516 ttttggtggcgagatatggtgaggaggatggg 547  Q
    ||||||||||||||||||||||||||| ||||    
T  36025122 ttttggtggcgagatatggtgaggaggctggg 36025091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 514
Target Start/End: Complemental strand, 7453061 - 7452955
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    |||||||||| ||||||||| ||||| ||||||  |||||||||   |||||| |||||||||||||||||  ||||||||| |||  |||||| ||  |    
T  7453061 aggagtatggaggtttgggggtgagacagttgaatgaatttaatagtgctttgttaggtaagtggtgttggcggatgttggtggacagaggtggtttgtg 7452962  T
Q  508 gtatagg 514  Q
    |||||||    
T  7452961 gtatagg 7452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 12332458 - 12332417
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  12332458 ggtatagggtgttggtggcgagatatggtgaggaggatggga 12332417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 36492991 - 36492950
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  36492991 ggtatagggtgttggtggcgaggtatggtgaggaggatggga 36492950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 547
Target Start/End: Original strand, 37165552 - 37165691
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    ||||| |||||||||||||| ||||   |||||  ||||||||| | ||| |  |||| ||||| ||||||| |||||| || ||   ||| || ||  |    
T  37165552 aggagaatgggggtttgggggtgaggcggttgaaggaatttaatattgctctattaggaaagtgatgttggaggatgttagtggatagaggaggcttgtg 37165651  T
Q  508 gtatagggttttggtggcgagatatggtgaggaggatggg 547  Q
    |||||||||  |||||||||||||||| ||||||||||||    
T  37165652 gtatagggtactggtggcgagatatggcgaggaggatggg 37165691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 492
Target Start/End: Original strand, 45255267 - 45255350
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    ||||| ||| ||||||||| |||||  ||||  |||||||||||| |||||| |||||||||| ||||||| | |||| |||||    
T  45255267 ggagtttggaggtttgggggtgagacggttggaagaatttaatttggctttgttaggtaagtgatgttggaggttgttagttga 45255350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 17659512 - 17659464
Alignment:
Q  436 gttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| |||||||||| | |||||| |||||||||||||||||| ||||    
T  17659512 gttgaaagaatttaatgtggctttgttaggtaagtggtgttggaggatg 17659464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 541
Target Start/End: Original strand, 19014429 - 19014548
Alignment:
Q  422 ttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttgg 521  Q
    |||||| | ||| ||||||| || ||||||||||||||||||||||| ||| |||||  ||||||||| |||  |||||||||  |||||   || ||||    
T  19014429 ttgggggttagacagttgagggagtttaatttagctttgctaggtaaatggagttggcggatgttggtggacagaggtgggttttggtattaagtgttgg 19014528  T
Q  522 tggcgagatatggtgaggag 541  Q
    ||||||||||||||||||||    
T  19014529 tggcgagatatggtgaggag 19014548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 542
Target Start/End: Original strand, 1247993 - 1248151
Alignment:
Q  384 cttggagctatgtttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgat 483  Q
    ||||||||| ||||||||  | | ||||||||||||| || ||| ||||  |||| || || ||||||   |||||| ||||||| | |||||||   ||    
T  1247993 cttggagctctgtttgtttacaaaaggagtatggggggttaggggtgaggcagttaagggagtttaatagtgctttgttaggtaaatagtgttggtgtat 1248092  T
Q  484 gttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
     ||||| ||  ||||||| ||  |||||||| | |||||||||||||||||||||||||    
T  1248093 attggtggataaaggtggtttttggtataggctgttggtggcgagatatggtgaggagg 1248151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 45270851 - 45270810
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  45270851 ggtataggattttggtggcgagatatgatgaggaggatggga 45270810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 26721341 - 26721266
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| ||||| |||||||||| || ||||| |||||| |||  ||||||||||||| ||||    
T  26721341 ggagtttggtggtttgggggtgagacagttgagagagttcaatttggctttgttagaaaagtggtgttggaggatg 26721266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 28358563 - 28358465
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    |||||||||||||||||  | ||||| ||||||||||   ||||||| ||   ||| |||||  |||| ||||| |||||||||||||||||||||||||    
T  28358563 gaatttaatttagcttta-tgggtaaatggtgttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggagg 28358465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 519
Target Start/End: Original strand, 32352741 - 32352852
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    |||||||||| ||||||||| ||||  | ||||  || ||||||||||||||| |||| || |||||||||  ||||||||| ||   |||||| ||  |    
T  32352741 aggagtatggcggtttgggggtgaggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggatagaggtggtttgtg 32352840  T
Q  508 gtatagggtttt 519  Q
    ||||||||||||    
T  32352841 gtatagggtttt 32352852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 22191312 - 22191353
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||| | |||||||||||||||||||    
T  22191312 ggtatagggtgttggtggcgtgttatggtgaggaggatggga 22191353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 39430958 - 39430905
Alignment:
Q  436 gttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggt 489  Q
    |||||| || |||||||  |||||| |||||||||||||||||| |||||||||    
T  39430958 gttgagggagtttaattgtgctttgttaggtaagtggtgttggaggatgttggt 39430905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 548
Target Start/End: Complemental strand, 52692145 - 52692040
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    ||||||||||  |||||  |||| || |||||||||| ||||||||| ||   ||  |||||  |||||||||| ||||||||| | |||||||||||||    
T  52692145 gaatttaattgtgctttattaggaaaatggtgttggaggatgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggagg 52692046  T
Q  543 atggga 548  Q
     |||||    
T  52692045 ctggga 52692040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 19350618 - 19350519
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    |||||||||||||||||| | ||||| |||||||||  | ||||| | ||   |||||||||  |||||||||| |||||||||||||||||||||||||    
T  19350618 gaatttaatttagctttgatgggtaaatggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggagg 19350519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 542
Target Start/End: Original strand, 29976439 - 29976573
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    |||||| ||| ||| ||||| ||||  ||||| | |||||||||||||||||| | ||||| ||| |||||  | ||||| | ||   |||||||||  |    
T  29976439 aggagtttggaggtctgggggtgaggcagttgcgggaatttaatttagctttgatgggtaaatggcgttggcggttgttgatagatagaggtgggttttg 29976538  T
Q  508 gtatagggttttggtggcgagatatggtgaggagg 542  Q
    ||||||||| |||||||||||||||||||||||||    
T  29976539 gtatagggtgttggtggcgagatatggtgaggagg 29976573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 10362743 - 10362702
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10362743 ggtatagggttttggtggcgagatatggtgaggaggatggga 10362702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 34434870 - 34434829
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34434870 ggtatagggttttggtggcgagatatggtgaggaggatggga 34434829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 408 - 537
Target Start/End: Complemental strand, 15674538 - 15674409
Alignment:
Q  408 aggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacg 507  Q
    |||||||||| ||||||||| || |  | ||||  || ||||||||||||||| |||| || |||||||||  ||||||||| |||  || ||| ||  |    
T  15674538 aggagtatggcggtttgggggtgcggaaattgaaggagtttaatttagctttgttaggaaaatggtgttggcggatgttggtggaccgagatggtttgtg 15674439  T
Q  508 gtatagggttttggtggcgagatatggtga 537  Q
    |||||||||||| || || |||||||||||    
T  15674438 gtatagggttttagtcgccagatatggtga 15674409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 548
Target Start/End: Complemental strand, 32186365 - 32186252
Alignment:
Q  435 agttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatgg 534  Q
    |||| ||||| ||||||||||| ||| | | ||| |||||||||  | ||||||| ||   |||||||||  |||||||||| ||||||||||||||| |    
T  32186365 agtttagagagtttaatttagccttgttggataaatggtgttggcagttgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatag 32186266  T
Q  535 tgaggaggatggga 548  Q
    ||||| || |||||    
T  32186265 tgaggtggctggga 32186252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 11060294 - 11060369
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| |||||  ||||| |||||||||| | | |||| |||||||||||||||||| ||||    
T  11060294 ggagtttggaggtttgggggtgagacggttgaaagaatttaatgtggttttgttaggtaagtggtgttggaggatg 11060369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 542
Target Start/End: Original strand, 10919955 - 10920029
Alignment:
Q  468 agtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    |||||||||||| ||||||||||||   ||| |||||  |||||||||| ||||| || || |||||||||||||    
T  10919955 agtggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggagg 10920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 11469250 - 11469196
Alignment:
Q  435 agttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggt 489  Q
    |||||| ||| |||||| |||| ||||||||||| |||||||||| |||||||||    
T  11469250 agttgaaagagtttaatatagcattgctaggtaaatggtgttggaggatgttggt 11469196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 548
Target Start/End: Complemental strand, 25350896 - 25350791
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    ||||||||||  |||||  |||| || |||| ||||| ||||||||| ||   || ||||||  |||||||||| ||||||||| | |||||||||||||    
T  25350896 gaatttaattgtgctttattaggaaaatggttttggaggatgttggtggatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggagg 25350797  T
Q  543 atggga 548  Q
     |||||    
T  25350796 ctggga 25350791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 13563343 - 13563503
Alignment:
Q  384 cttggagctatgtttgttcgcgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgat 483  Q
    |||||||| || | ||||| ||| |||||||||||||| ||||  ||||  |  |||| || |||||| | |||||||||||||||| ||| |||| |||    
T  13563343 cttggagcgatatatgttctcgaaaggagtatgggggtctgggtgtgaggcaactgagggagtttaatcttgctttgctaggtaagttgtgctggaggat 13563442  T
Q  484 gttggttgactaaggtgggttacggt-atagggttttggtggcgagatatggtgaggagga 543  Q
    | | |||||   |||||||||| ||| |||| || || ||||| |||||| | ||||||||    
T  13563443 gctagttgatagaggtgggttatggtaatagagtctttgtggcaagatattgagaggagga 13563503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 542
Target Start/End: Complemental strand, 2072247 - 2072115
Alignment:
Q  410 gagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggt 509  Q
    |||||||| | ||||||||||||| ||||||| | ||||||| | |||||  ||||||| ||||| |||  ||||||||| ||   ||| ||| |  |||    
T  2072247 gagtatggagatttggggttgagacagttgaggggatttaatattgctttattaggtaaatggtgatggcagatgttggtggatagaggagggatgtggt 2072148  T
Q  510 atagggttttggtggcgagatatggtgaggagg 542  Q
    |||||||  ||||||||||||||||||||||||    
T  2072147 atagggtgctggtggcgagatatggtgaggagg 2072115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 10562765 - 10562840
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| ||||| |||||| |||||||||||| |||||| |||| ||||||||||||| ||||    
T  10562765 ggagtttggaggtttgggggtgagacagttgaaagaatttaatttggctttgttaggaaagtggtgttggaggatg 10562840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 4607257 - 4607379
Alignment:
Q  203 tgttttaactcgtttgttttatgtttaatcttgcgattattttaaaatatacgaacgcatagaaatgatcaaagaatatttttgaatttaagtacatcta 302  Q
    ||||||||||| |||| |||||||||||||||| ||||||||| |||| ||  || |  |||||| |||||| | ||| ||||||| || |||||| | |    
T  4607257 tgttttaactcatttgctttatgtttaatcttgtgattattttgaaatgtatcaaagagtagaaaggatcaaggcatacttttgaacttgagtacaacca 4607356  T
Q  303 cta-accaaaaataggctacctt 324  Q
    ||| |||||||| || |||||||    
T  4607357 ctagaccaaaaacagcctacctt 4607379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 477
Target Start/End: Original strand, 56336928 - 56337000
Alignment:
Q  404 cgagaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttg 477  Q
    ||||||||| ||||||||||||||| |||  ||||||| ||||||||| | |||||| |||| |||||||||||    
T  56336928 cgagaggagaatgggggtttggggt-gaggcagttgagggaatttaatcttgctttgttaggaaagtggtgttg 56337000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 519
Target Start/End: Complemental strand, 20675693 - 20675620
Alignment:
Q  446 tttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggtttt 519  Q
    ||||||||||||||| |||| || |||||||||  ||||||||| |||  |||||| ||  |||||||||||||    
T  20675693 tttaatttagctttgttaggaaaatggtgttggcggatgttggtggacagaggtggtttgtggtatagggtttt 20675620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 38296316 - 38296275
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  38296316 ggtatagggtgttggtggcgagatatggtgaggtgaatggga 38296275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 542
Target Start/End: Original strand, 52617402 - 52617430
Alignment:
Q  514 ggttttggtggcgagatatggtgaggagg 542  Q
    |||||||||||||||||||||||||||||    
T  52617402 ggttttggtggcgagatatggtgaggagg 52617430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 7000219 - 7000294
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| ||||| |||||| ||||||||||||  ||||| |||||||||||||||||| ||||    
T  7000219 ggagtttggaggtttgggggtgagacagttgaaagaatttaatttgcctttgttaggtaagtggtgttggaggatg 7000294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 20208152 - 20208227
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| ||||| |||||||||| || ||||| |||||| |||| ||||||||||||| ||||    
T  20208152 ggagtttggtggtttgggggtgagacagttgagagagttcaatttggctttgttaggaaagtggtgttggaggatg 20208227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 4297839 - 4297880
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  4297839 ggtatagggtgttggtggcgaggtatggtgaggaggatggga 4297880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 41590706 - 41590665
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  41590706 ggtatagggtgttggtggcgaggtatggtgaggaggatggga 41590665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 22174470 - 22174550
Alignment:
Q  453 tagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatg 533  Q
    |||||||| ||||||  |||||||||| | ||||||| ||   |||||||||| ||||||| || ||||||||||||||||    
T  22174470 tagctttgttaggtagatggtgttggaggttgttggtggatagaggtgggttatggtatagagtgttggtggcgagatatg 22174550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 39351897 - 39351943
Alignment:
Q  446 tttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  39351897 tttaatttatctttgttgggtaagtggtgttggatgatgttgattga 39351943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 27529531 - 27529482
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    |||||||||||||| || ||||| |||||| |||||| ||||||||||||    
T  27529531 gaatttaatttagcattactagggaagtggagttggaggatgttggttga 27529482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 63757 - 63864
Alignment:
Q  435 agttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatgg 534  Q
    ||||||| || |||||||||||||||||||| || |||||||||  ||||||| | ||| ||| |   ||  ||||||| || ||||||||||||||||     
T  63757 agttgagggagtttaatttagctttgctagggaaatggtgttggcggatgttgatggacaaagataatttttggtatagagtgttggtggcgagatatga 63856  T
Q  535 tgaggagg 542  Q
    ||||||||    
T  63857 tgaggagg 63864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 492
Target Start/End: Original strand, 31071268 - 31071322
Alignment:
Q  438 tgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    |||||||||||||| || ||||| | ||||||||||||||||||||||| |||||    
T  31071268 tgagagaatttaatatatctttgttgggtaagtggtgttggatgatgttagttga 31071322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 26146825 - 26146784
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  26146825 ggtatagggtgttggtggcgagatatggcgaggaggatggga 26146784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 43310869 - 43310828
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  43310869 ggtatagggtgttggtggcgagatatggcgaggaggatggga 43310828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 22863988 - 22863941
Alignment:
Q  441 gagaatttaatttagctttgctaggtaagtggtgttggatgatgttgg 488  Q
    |||||||||||||| ||||| |||| ||||||||||||| ||||||||    
T  22863988 gagaatttaatttatctttgttagggaagtggtgttggaggatgttgg 22863941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 492
Target Start/End: Complemental strand, 18697886 - 18697840
Alignment:
Q  446 tttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    |||||| |||||||| |||| ||||||||||||| ||||||||||||    
T  18697886 tttaatgtagctttgttaggaaagtggtgttggaggatgttggttga 18697840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Original strand, 29895261 - 29895303
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgt 485  Q
    ||||||||||| |||||| |||||||||||||||||| |||||    
T  29895261 gaatttaatttggctttgttaggtaagtggtgttggaggatgt 29895303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 11879014 - 11879079
Alignment:
Q  220 tttatgtttaatcttgcgattattttaaaatatacgaacgcatagaaatgatcaaagaatattttt 285  Q
    |||||||||| || |||||||||||| |||| || ||| ||||| |||||||||| || |||||||    
T  11879014 tttatgtttattcatgcgattattttgaaatgtatgaaagcataaaaatgatcaaggattattttt 11879079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 24738861 - 24738898
Alignment:
Q  442 agaatttaatttagctttgctaggtaagtggtgttgga 479  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  24738861 agaatttaatttagctttactagggaagtggtgttgga 24738898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 519
Target Start/End: Original strand, 26894041 - 26894154
Alignment:
Q  406 agaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggtta 505  Q
    |||||||||||  ||||||||| || |  ||||||  || ||||||||| ||||| |||| || |||||||||  ||||||||| |||  |||||| ||     
T  26894041 agaggagtatgacggtttgggggtgcggaagttgaaggagtttaatttaactttgttaggaaaatggtgttggcggatgttggtggacataggtggtttg 26894140  T
Q  506 cggtatagggtttt 519  Q
     |||||||||||||    
T  26894141 tggtatagggtttt 26894154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 519
Target Start/End: Original strand, 26899480 - 26899593
Alignment:
Q  406 agaggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatgttggttgactaaggtgggtta 505  Q
    |||||||||||  ||||||||| || |  ||||||  || ||||||||| ||||| |||| || |||||||||  ||||||||| |||  |||||| ||     
T  26899480 agaggagtatgacggtttgggggtgcggaagttgaaggagtttaatttaactttgttaggaaaatggtgttggcggatgttggtggacataggtggtttg 26899579  T
Q  506 cggtatagggtttt 519  Q
     |||||||||||||    
T  26899580 tggtatagggtttt 26899593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 42183230 - 42183279
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    |||||||||||| ||||| |||| ||||||||||||| | ||||||||||    
T  42183230 gaatttaatttatctttgttaggaaagtggtgttggaggttgttggttga 42183279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 542
Target Start/End: Complemental strand, 6743 - 6663
Alignment:
Q  462 taggtaagtggtgttggatgatgttggttgactaaggtgggttacggtatagggttttggtggcgagatatggtgaggagg 542  Q
    |||| ||||| ||||||| ||||||||| ||   ||| || ||  ||||||||||||| ||||||||||||||||||||||    
T  6743 taggcaagtgatgttggaggatgttggtagagcgaggcggtttgtggtatagggttttagtggcgagatatggtgaggagg 6663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 8240 - 8165
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| ||||| |||||||||| || ||||| |||||| |||  ||||||||||||| ||||    
T  8240 ggagtttggtggtttgggggtgagacagttgagagagttcaatttggctttgttagaaaagtggtgttggaggatg 8165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 13174 - 13099
Alignment:
Q  409 ggagtatgggggtttggggttgagatagttgagagaatttaatttagctttgctaggtaagtggtgttggatgatg 484  Q
    ||||| ||| ||||||||| ||||| |||||||||| || ||||| |||||| |||  ||||||||||||| ||||    
T  13174 ggagtttggtggtttgggggtgagacagttgagagagttcaatttggctttgttagaaaagtggtgttggaggatg 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 545
Target Start/End: Complemental strand, 55272 - 55234
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatg 545  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  55272 ggtatagggtgttggtggcgagatatggcgaggaggatg 55234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 143362 - 143400
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatg 545  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  143362 ggtatagggtgttggtggcgagatatggcgaggaggatg 143400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 32839 - 32790
Alignment:
Q  443 gaatttaatttagctttgctaggtaagtggtgttggatgatgttggttga 492  Q
    |||||||||||||||||  |||| ||||||||||||| | ||||||||||    
T  32839 gaatttaatttagctttattagggaagtggtgttggaggttgttggttga 32790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 28384 - 28343
Alignment:
Q  507 ggtatagggttttggtggcgagatatggtgaggaggatggga 548  Q
    |||||||||| |||||||| |||||||| |||||||||||||    
T  28384 ggtatagggtgttggtggcaagatatggcgaggaggatggga 28343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University