View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9180_low_3 (Length: 581)
Name: NF9180_low_3
Description: NF9180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9180_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 29226971 - 29227482
Alignment:
| Q |
18 |
atagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29226971 |
atagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatattt |
29227070 |
T |
|
| Q |
118 |
gcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttcttaacttatctttgtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29227071 |
gcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttctta-----tctttgt- |
29227164 |
T |
|
| Q |
218 |
atctctaaggaaataaaatgaaaagagaataaataaactattggtgttattaatatataagaagaatgacaaactatatatctaaagtgcagtgttcact |
317 |
Q |
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| T |
29227165 |
--ctctaaggaaaaaatatgaaaagagaataaataaactattggtgttattaatatataagaagaatgacaaactatatatctacagtgcagtgttcact |
29227262 |
T |
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| Q |
318 |
gctcaagaaataaatggtggaaaatatcaaaagaattggtcctgactcctgagtagtttggctatgtaaaaattaactaaaagtcagttgtagtaataaa |
417 |
Q |
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| T |
29227263 |
gctcaagaaataaatggtggaaaatatcaaaagaattggtcctgactcctgaatagtttggctatgtaaaaattaaccaaaagtcagttgtagtaataaa |
29227362 |
T |
|
| Q |
418 |
tgctggaaaataaattgacaaaacaggtgccatgcattagagtacaagagaactctttgtgtcacactatggtaagttatgtgtcgacattacatgttgt |
517 |
Q |
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| T |
29227363 |
tgctggaaaataaattgacaaaacaggtgccatgcattagagtacaggagaactctttgtgtcacactatggtaagttatgtgtcgacattacatgttgt |
29227462 |
T |
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| Q |
518 |
tctgtgtcattcgtgggaag |
537 |
Q |
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|||||||||||||||||||| |
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| T |
29227463 |
tctgtgtcattcgtgggaag |
29227482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 29145002 - 29144797
Alignment:
| Q |
18 |
atagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145002 |
atagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatattt |
29144903 |
T |
|
| Q |
118 |
gcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttcttaacttatctttgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144902 |
gcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtttcccatgtttcttaacttatctttgtg |
29144803 |
T |
|
| Q |
218 |
atctct |
223 |
Q |
| |
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|||||| |
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|
| T |
29144802 |
atctct |
29144797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5306846 - 5307016
Alignment:
| Q |
20 |
agcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatatttgc |
119 |
Q |
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|||||||||||| |||||||| ||| |||||||||||||| |||| || |||||||| ||||| ||||||| |||||| ||||||||| ||||||||||| |
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| T |
5306846 |
agcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgacccttgataaaagttgtatcccagttccaaatatttgc |
5306945 |
T |
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| Q |
120 |
actaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtt |
190 |
Q |
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||||||||||| |||||||| ||||| || || |||||||||| |||||||||| | ||||||||||||| |
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| T |
5306946 |
actaataacatgctaagaagagcttgggaagagatgaaccattctttcatactttgagttctctctgtgtt |
5307016 |
T |
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