View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9180_low_4 (Length: 567)
Name: NF9180_low_4
Description: NF9180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9180_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 24587831 - 24588236
Alignment:
| Q |
17 |
aattccacgaaaatgcactaaaaaattgtcaattgatccatcttcttatttctagtaccttggacaataagaaaccactttttcacattcaaacatgaga |
116 |
Q |
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| T |
24587831 |
aattccacgaaaatgcactaaaaaattgtcaattgatccatcttcatatttctagtaccttggacaataagaaaccactttttcactttcaaacatgaga |
24587930 |
T |
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| Q |
117 |
ttttaaagaataaacaacaatcttatgttgcagcaagttcttaggggttgagaggaaaatgaaatgaaactttgttttttatttgttagaattaagggta |
216 |
Q |
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| T |
24587931 |
ttttaaagaataaacaacaatcttatgttgcagcaagttcttagggtttgagaggaaaatgaaatgaaactttgttttttatttgttagaattaagggta |
24588030 |
T |
|
| Q |
217 |
tattaagaagtttatggtttttgtaaagtaggagtcaaattataacggtacgatgtaaaatttccttctggaacactttcgtaaaagcaccaacattgca |
316 |
Q |
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| T |
24588031 |
tattaagaagtttatggtttttgtaaagtaggagtcaaattataagggtacgatgtaaaatttccttctggaacactttcgtgaaagcacaaacattgca |
24588130 |
T |
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| Q |
317 |
atcttgcataacctaactttcggtagatttgtttgcatgtcttacattttgaaggatggtctgtgtttggtaggccatatcttggcaacacctcccaaag |
416 |
Q |
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| T |
24588131 |
atcttgcataacctaactttcggtagatttgtttgcatgtcttacattttgaaggatggtatgtgtttggtaggccatatcttggcaacatctcccgaag |
24588230 |
T |
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| Q |
417 |
tatgag |
422 |
Q |
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|||||| |
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| T |
24588231 |
tatgag |
24588236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 490 - 567
Target Start/End: Original strand, 24588303 - 24588380
Alignment:
| Q |
490 |
gtctcatatttgaacctgaatttagaaatcaactaaattaaaactcttaattgccgtctatttaggtccaacaagcag |
567 |
Q |
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| T |
24588303 |
gtctcatatttgaacctgaatttagaaatcaactaaattaaaactcttaattgccgtctatttagatccaacaagcag |
24588380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 31418637 - 31418524
Alignment:
| Q |
20 |
tccacgaaaatgcactaaaaaattgtcaattgatccatcttcttatttctagtaccttggacaataagaaaccactttttcacattcaaacatgagattt |
119 |
Q |
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||||| ||||||||| |||| |||||||||||||| |||||| ||| ||||| ||||| |||| |||||| || |||| || |||| ||||||||| || |
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| T |
31418637 |
tccacaaaaatgcaccaaaacattgtcaattgatcgatcttcgcattcctagtgccttgaacaacaagaaaacatttttccatattc-aacatgagactt |
31418539 |
T |
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| Q |
120 |
taaagaataaacaac |
134 |
Q |
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| | | ||||||||| |
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| T |
31418538 |
tgaggtataaacaac |
31418524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 16767100 - 16767001
Alignment:
| Q |
36 |
aaaaaattgtcaattgatccatcttcttatttctagtaccttggacaataagaaaccactttttcacattcaaacatgagattttaaagaataaacaaca |
135 |
Q |
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|||||| ||||||||||||||||||| | | ||| | ||||||||| |||||| || ||||||||||||||| |||||||||||| | || ||||||| |
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| T |
16767100 |
aaaaaagtgtcaattgatccatcttcacactcctaatgtcttggacaaaaagaaa-cattttttcacattcaaa-atgagattttaaggcatgaacaaca |
16767003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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