View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_high_14 (Length: 242)
Name: NF9181_high_14
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 13400851 - 13401068
Alignment:
| Q |
12 |
atcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattggttattttcattgatgtttttaagttgtcgtgattcatagtgttg |
111 |
Q |
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| T |
13400851 |
atcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattgttgattttcattgatgtttttaatttgttgtgattcatagtgttg |
13400950 |
T |
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| Q |
112 |
aagtgttgattttatgtttttaattatcgttaaagtcttgtggttctgagtgctaaattgttgg-tttttgctttgtagagcgaagccctccgattgagg |
210 |
Q |
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| T |
13400951 |
aagtgttgattttatgtttttaattatcgttaaagtcttgtggttctgagtgctaaattgttggttttttgctttgtagagcgaagccctccgattgagg |
13401050 |
T |
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| Q |
211 |
aagttattcaatctggtg |
228 |
Q |
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| T |
13401051 |
aagttattcaatctggtg |
13401068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 54862859 - 54862783
Alignment:
| Q |
13 |
tcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattggttattttcattgatgtttttaa |
89 |
Q |
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| T |
54862859 |
tcaacaactcgaagcaactacggaatttcggaagcgtctttccatcggtaactgttgattttatttgatgtttttaa |
54862783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 54626509 - 54626584
Alignment:
| Q |
14 |
caacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattggttattttcattgatgtttttaa |
89 |
Q |
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| T |
54626509 |
caacaactcgaagcaactacggaatttcggaagcgtctttccgttggtaaccgttgattttatttgatgtttttaa |
54626584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 50192635 - 50192591
Alignment:
| Q |
184 |
ttgtagagcgaagccctccgattgaggaagttattcaatctggtg |
228 |
Q |
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| T |
50192635 |
ttgtagatcggacccctccgattgaggaggttattcaatctggtg |
50192591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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