View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_high_3 (Length: 523)
Name: NF9181_high_3
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 52373412 - 52373928
Alignment:
| Q |
1 |
gttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctggttaccttggtcacccttctt |
100 |
Q |
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| T |
52373412 |
gttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctggttaccttggtcacccttctt |
52373511 |
T |
|
| Q |
101 |
taacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgtaaaaggagaaaacaggtatct |
200 |
Q |
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| T |
52373512 |
taacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgtaaaaggagaaaacaggtatct |
52373611 |
T |
|
| Q |
201 |
ctttgttactggtagaattcaagatactatacagcttcaaaatggtgaaaagattcaaccacattacatagagactgtggtttttaacagtttcccaaag |
300 |
Q |
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| T |
52373612 |
ctttgttactggtagaattcaagatactatacagcttcaaaatggtgaaaagattcaaccacattacatagagactgtggtttttaacagtttcccaaag |
52373711 |
T |
|
| Q |
301 |
ttactacgaggaggttgtgttgcggcttttaaagttttagcaacggttgtaattgttgcagagatgcaaaggatggaaaaagatttgtatgaagggattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52373712 |
ttactacgaggaggttgtgttgcggcttttaaagttttagcaacggttgtaattgttgcagagatgcaaaggatggaaaaagatttggatgaagggattc |
52373811 |
T |
|
| Q |
401 |
tgaggagtgttggcgaaggaattaaagaaagtgttttgaagaaagagggtgtagaagttgtatgggttgttttggttaagagtgaatgtgttccgaaaac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52373812 |
tgaggagtgttggcgaaggaattaaagaaagtgttttgaagaaagagggtgtagaagttggatgggttgttttggttaagagtgaatgtgttccgaaaac |
52373911 |
T |
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| Q |
501 |
tacttctgggaaattgc |
517 |
Q |
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| T |
52373912 |
tacttctgggaaattgc |
52373928 |
T |
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