View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_high_4 (Length: 461)
Name: NF9181_high_4
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 10284136 - 10283707
Alignment:
| Q |
16 |
ggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaggaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10284136 |
ggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaagaaat |
10284037 |
T |
|
| Q |
116 |
gctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaa |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284036 |
gctcaggattaagcaactggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaa |
10283937 |
T |
|
| Q |
216 |
aaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcct |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
10283936 |
aaagctgagacattatgcaggagaagttcctttgttaacttctgattatggtgcttctgaaggttggattggttcaaatttgaatcctaaagtggctcct |
10283837 |
T |
|
| Q |
316 |
gagtttgctgcctatgctattcttcctcaaattgcttacttcgaattcattccttttgcacaaattgatggaaccgaggtagagcttgagccagtgggat |
415 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10283836 |
gagtttgctacttatgctattcttcctcaaattgcttacttcgaattcattccttttgcacaaattgatggaaccgaggtagagcttgagccagtgggat |
10283737 |
T |
|
| Q |
416 |
taactgatgtgaagattggtgaggagtatg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10283736 |
taactgatgtgaagattggtgaggagtatg |
10283707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 10243312 - 10242891
Alignment:
| Q |
16 |
ggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaggaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10243312 |
ggtgttcttagcagtagaatcacacatccatccattagaactgcaatgtcaaaactgctgaaaccaaatcctgaactagctaacttgatccacaagaaat |
10243213 |
T |
|
| Q |
116 |
gctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaa |
215 |
Q |
| |
|
|| |||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||| |||| |
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|
| T |
10243212 |
gcataggattgagcaattggtatggactgataccagagctttttcctaatgttaagtatgttcaagggatcatgactggtgcaatggaaccttatgtgaa |
10243113 |
T |
|
| Q |
216 |
aaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcct |
315 |
Q |
| |
|
|||| ||||||| ||||||| ||| ||||||||||| |||||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||| |
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|
| T |
10243112 |
aaagttgagacactatgcaggagaggttcctttgttgacttctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcct |
10243013 |
T |
|
| Q |
316 |
gagtttgctgcctatgctattcttcctcaaattgcttacttcgaattcattccttttgcacaaattgatggaaccgaggtagagcttgagccagtgggat |
415 |
Q |
| |
|
||||||||| | |||| | |||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||| |
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|
| T |
10243012 |
gagtttgctacttatgttgttcttcctcaaattgcttactttgaattcattcctttgtcacaacttgatggaactaaggtagagcttgagccagttggat |
10242913 |
T |
|
| Q |
416 |
taactgatgtgaagattggtga |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10242912 |
taactgatgtgaagattggtga |
10242891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 10272894 - 10272465
Alignment:
| Q |
16 |
ggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaggaaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10272894 |
ggtgttcttagcagtagaatcacacatccattcattagaactgctatgtctaaactgctgacaccaaatcctgaactagctaacttgatccacaagaaat |
10272795 |
T |
|
| Q |
116 |
gctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaa |
215 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||| ||||||||| ||| |||| |
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|
| T |
10272794 |
gcataggattgagcaattggtatggattgataccggagcttttccctaatgctaagtatcttctagggatcatgacaggttcaatggaacattacttgaa |
10272695 |
T |
|
| Q |
216 |
aaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcct |
315 |
Q |
| |
|
|||| ||||||| ||||||| ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
10272694 |
aaagttgagacactatgcaggagaggttcctttggtgacttctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcct |
10272595 |
T |
|
| Q |
316 |
gagtttgctgcctatgctattcttcctcaaattgcttacttcgaattcattccttttgcacaaattgatggaaccgaggtagagcttgagccagtgggat |
415 |
Q |
| |
|
||||||||| | |||| | |||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||| |||||||||||||| |||| |
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|
| T |
10272594 |
gagtttgctacttatgttgttcttcctcaaattgcttactttgaattcattcctttgaaacaacttgatggaactaaggtggagcttgagccagttggat |
10272495 |
T |
|
| Q |
416 |
taactgatgtgaagattggtgaggagtatg |
445 |
Q |
| |
|
|||||||||||||||| || |||||||||| |
|
|
| T |
10272494 |
taactgatgtgaagatcggcgaggagtatg |
10272465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 10265197 - 10264776
Alignment:
| Q |
16 |
ggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaggaaat |
115 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10265197 |
ggtgttcttagcaatagggtaacacatccatccattagaactgctatgtctaaactgctgaaaccaaatcctgaactagctaacttgatccacaagaaat |
10265098 |
T |
|
| Q |
116 |
gctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaa |
215 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||| ||||||||| ||| |||| |
|
|
| T |
10265097 |
gcataggattgagcgattggtatggattgataccagaactttttcctaatgttaagtatgttctaggaatcatgacaggttcaatggaacattacttgaa |
10264998 |
T |
|
| Q |
216 |
aaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaaggttggattagtttaaatttgaatcctaaagtggctcct |
315 |
Q |
| |
|
|||| ||||||| ||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
10264997 |
aaagttgagacactatgcaggagaggttcctttgttgacttctgaatatggtgcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcct |
10264898 |
T |
|
| Q |
316 |
gagtttgctgcctatgctattcttcctcaaattgcttacttcgaattcattccttttgcacaaattgatggaaccgaggtagagcttgagccagtgggat |
415 |
Q |
| |
|
||||||||| | |||| | |||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||| |||||||||||||| |||| |
|
|
| T |
10264897 |
gagtttgctacttatgttgttcttcctcaaattgcttactttgaattcattcctttgaaacaacttgatggaactaaggtggagcttgagccagttggat |
10264798 |
T |
|
| Q |
416 |
taactgatgtgaagattggtga |
437 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
10264797 |
taactcatgtgaagattggtga |
10264776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 48367616 - 48367773
Alignment:
| Q |
16 |
ggtgttcttagcagtagaatcacacatccatccattagaactgctatgtcaaaattgctgaaaccaaatcctgaactagctaacttgatccacaggaaat |
115 |
Q |
| |
|
||||||||||| || ||| |||| ||| |||||| ||||||||||||| |||||||| ||||||||||| ||| |||| ||| | ||||||| | || |
|
|
| T |
48367616 |
ggtgttcttagtagcagagtcacggttccctccattcgaactgctatgtctaaattgctcaaaccaaatccagaattagcgaacataatccacaaaagat |
48367715 |
T |
|
| Q |
116 |
gctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
173 |
Q |
| |
|
| |||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
48367716 |
gtataggattaagcaactggtatggtttgataccggagctttttccgaatgcaaagta |
48367773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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