View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9181_high_6 (Length: 421)

Name: NF9181_high_6
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9181_high_6
NF9181_high_6
[»] chr2 (1 HSPs)
chr2 (1-405)||(2601694-2602092)
[»] chr3 (12 HSPs)
chr3 (236-370)||(26315299-26315433)
chr3 (236-384)||(28579282-28579430)
chr3 (236-363)||(28574252-28574379)
chr3 (236-384)||(28585430-28585578)
chr3 (248-391)||(20616577-20616720)
chr3 (236-370)||(28567417-28567551)
chr3 (32-111)||(28567687-28567766)
chr3 (32-111)||(28574515-28574594)
chr3 (32-111)||(28585714-28585793)
chr3 (32-111)||(26315569-26315648)
chr3 (32-111)||(28579567-28579646)
chr3 (33-82)||(20616908-20616957)
[»] chr6 (4 HSPs)
chr6 (236-370)||(24070859-24070993)
chr6 (236-370)||(24079743-24079877)
chr6 (32-111)||(24071135-24071214)
chr6 (32-111)||(24079522-24079601)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 2601694 - 2602092
Alignment:
Q  1 taagtgatttgaaggccactaatgaatggacatgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601694 taagttatttgaaggccactaatgaatggacatgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattga 2601793  T
Q  101 agtttccaagtcagtttcttaacttaaaatgttattttagttatttaactgtaatgatcgctaacgtacaagnnnnnnnnatataatagatggtggaaag 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||           ||||||||||||||||||||    
T  2601794 agtttccaagtcagtttctta-cttaaaatgttattttagttatttaactgtaatgatcgctgatgtac-----gtctttatataatagatggtggaaag 2601887  T
Q  201 accttgagatggctaaggagccaaaattttctcactatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagacca 300  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  2601888 accttgaaatggctaaggagccaaaatttgctcattatcaaccactgaaatggtacatgtggcccatggtatgctttacagatccaagtttttcagacca 2601987  T
Q  301 aaggattgagctcaccaaagttatctctctagtttatgttattgatgacattttcgatgttcatgggacactagaccagcttactctatttgtagactta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2601988 aaggattgagctcaccaaagttatctctctagtttatgttattgatgacattttcgatgtttatgggacactagaccagcttactctatttgtagactta 2602087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 236 - 370
Target Start/End: Complemental strand, 26315433 - 26315299
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| || ||||||||||  ||||||||| ||||||||||||||||||  |||||||| ||||||||||||||||| |||  ||||||| || |||    
T  26315433 tatcaacctctgaaatggtacacatggcccatggcatgctttacagatccaaacttttcagaacaaaggattgagctcacaaaacctatctctttaattt 26315334  T
Q  336 atgttattgatgacattttcgatgttcatgggaca 370  Q
    |||||||||||||||||||||||||||| ||||||    
T  26315333 atgttattgatgacattttcgatgttcacgggaca 26315299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 384
Target Start/End: Complemental strand, 28579430 - 28579282
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||||||||  |||||||| |||||| |||| |||||||||  ||||||| || |||    
T  28579430 tatcaacctctcaaatggtacacatggcccatggcatgctttacagatccaaacttttcagaacaaagggttgaactcaccaaacctatctctttaattt 28579331  T
Q  336 atgttattgatgacattttcgatgttcatgggacactagaccagcttac 384  Q
    |||||||||||||| ||||||||||||| |||||| | ||||| |||||    
T  28579330 atgttattgatgaccttttcgatgttcacgggacattggaccaacttac 28579282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 236 - 363
Target Start/End: Complemental strand, 28574379 - 28574252
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| || ||||||||||  ||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||||  |||||||||| |||    
T  28574379 tatcaacctctaaaatggtacacatggcccatggcatgctttacagatccaaacttttcagaacaaaggattgagctcaccaaacctatctctctaattt 28574280  T
Q  336 atgttattgatgacattttcgatgttca 363  Q
    |||| ||||||||||||||||| |||||    
T  28574279 atgtcattgatgacattttcgacgttca 28574252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 384
Target Start/End: Complemental strand, 28585578 - 28585430
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||||||||  |||||||| |||||| |||| |||||||||  ||||||  || |||    
T  28585578 tatcaacctctcaaatggtacacatggcccatggcatgctttacagatccaaacttttcagaacaaagggttgaactcaccaaacctatctccttaattt 28585479  T
Q  336 atgttattgatgacattttcgatgttcatgggacactagaccagcttac 384  Q
    |||||||||||||| ||||||||||||| |||||| | ||||| |||||    
T  28585478 atgttattgatgaccttttcgatgttcacgggacattggaccaacttac 28585430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 20616720 - 20616577
Alignment:
Q  248 aaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagtttatgttattgatg 347  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||  || ||||| ||||||||||||||   ||||||||||||||| |||||||||    
T  20616720 aaatggtacatgtggcccatggcatgttttacagatccatgtttttcgaacgaaagggttgagctcaccaaaccaatctctctagtttatattattgatg 20616621  T
Q  348 acattttcgatgttcatgggacactagaccagcttactctattt 391  Q
    | |||||||||||||| || ||| | || || ||||||||||||    
T  20616620 atattttcgatgttcacggaacattggatcaacttactctattt 20616577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 370
Target Start/End: Complemental strand, 28567551 - 28567417
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| || ||||||||||  ||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||| |||   |||||| || |||    
T  28567551 tatcaacctctgaaatggtacacatggcctatggcatgctttacagatccaaacttttcagaacaaaggattgagctcacaaaacccatctctttaattt 28567452  T
Q  336 atgttattgatgacattttcgatgttcatgggaca 370  Q
    |||||||||| ||||||||||||||||| ||||||    
T  28567451 atgttattgacgacattttcgatgttcacgggaca 28567417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 28567766 - 28567687
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  28567766 atgtttagaggaacttgctaaaatcaattctggcatagttaggttcatgaaccagaatgaaaccattgaagtttccaagt 28567687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 28574594 - 28574515
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||    
T  28574594 atgtttagaggaacttgctaaaatcaattccaccatagttaggttcaggaatcagaatgagaccattgaagtttccaagt 28574515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 28585793 - 28585714
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  28585793 atgtttagaagaacttgctaaaatcaattccaacatagttgggttcatgaatcacaatgagaccattgaagtttccaagt 28585714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 26315648 - 26315569
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||||    
T  26315648 atgtttagaggaacttgctaaaatcaactccaccatagttaggttcatgaatcagaatgagaccactgaagtttccaagt 26315569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 28579646 - 28579567
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||| ||||||||||    
T  28579646 atgtttagaggaacttgctaaaatcaattccaccatggttaggttcatgaatcagaatgagaccattgaggtttccaagt 28579567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 20616957 - 20616908
Alignment:
Q  33 tgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaa 82  Q
    |||||||| |||||||||||||| || ||||||||||||| |||||||||    
T  20616957 tgtttagatgaacttgctaaaatgaactccagcatagttaagttcatgaa 20616908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 370
Target Start/End: Complemental strand, 24070993 - 24070859
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| || ||||||||||  ||||||||| ||||||||||||||||||  |||||||| ||||||||||||||||| |||   |||||| |  |||    
T  24070993 tatcaacctctgaaatggtacacatggcccatggcatgctttacagatccaaacttttcagaacaaaggattgagctcacaaaacccatctctttgattt 24070894  T
Q  336 atgttattgatgacattttcgatgttcatgggaca 370  Q
    |||||||||| ||||||||||||||||| ||||||    
T  24070893 atgttattgacgacattttcgatgttcacgggaca 24070859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 24079743 - 24079877
Alignment:
Q  236 tatcaaccactcaaatggtacatgtggcccatgacatgctttacagatccaagtttttcagaccaaaggattgagctcaccaaagttatctctctagttt 335  Q
    |||||||| || ||||||||||  ||||||||| ||||||||||||||||||  |||||||| ||||||||||||||||| |||   |||||| |  |||    
T  24079743 tatcaacctctgaaatggtacacatggcccatggcatgctttacagatccaaacttttcagaacaaaggattgagctcacaaaacccatctctttgattt 24079842  T
Q  336 atgttattgatgacattttcgatgttcatgggaca 370  Q
    |||||||||| ||||||||||||||||| ||||||    
T  24079843 atgttattgacgacattttcgatgttcacgggaca 24079877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 24071214 - 24071135
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    ||||||| | ||||||||||| ||||| ||||||||||||||||||||||| |||||||| | || ||||||||||||||    
T  24071214 atgtttaaaggaacttgctaatatcaactccagcatagttaggttcatgaaccagaatgagaccactgaagtttccaagt 24071135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 24079522 - 24079601
Alignment:
Q  32 atgtttagaagaacttgctaaaatcaattccagcatagttaggttcatgaatcagaatgaaatcattgaagtttccaagt 111  Q
    ||||||| | ||||||||||| ||||| ||||||||||||||||||||||| |||||||| | || ||||||||||||||    
T  24079522 atgtttaaaggaacttgctaatatcaactccagcatagttaggttcatgaaccagaatgagaccactgaagtttccaagt 24079601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University