View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_high_7 (Length: 368)
Name: NF9181_high_7
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 62 - 368
Target Start/End: Original strand, 10340902 - 10341208
Alignment:
| Q |
62 |
cacagtaactttttcaacaggtagagttcaagggatgaaatctagaaatggacctgtcaatcaattattagctatgtttagaaaagtaaatactatgtca |
161 |
Q |
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| T |
10340902 |
cacagtaactttttcaacaggtagagttcaagggatgagatctagaaatggacctgtcaatcaattattagctatgtttagaaaagtaaatactatgtca |
10341001 |
T |
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| Q |
162 |
tttatggtttaactatatgtgagaaatgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaag |
261 |
Q |
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| T |
10341002 |
tttatggtttaactatgtgtgagaaatgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaag |
10341101 |
T |
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| Q |
262 |
gaacataattatatcacccttgacatttgtcattttcattagatgttaggtatttagtcatataagcaacnnnnnnnggagtgatggtggttacaaagag |
361 |
Q |
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| T |
10341102 |
gaacataattatatcacccttgacatttgtcattttcattagatgttaggtatttagtcatataagcaacaaaaaaaggagtgatggtggttacaaagag |
10341201 |
T |
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| Q |
362 |
ttgtttc |
368 |
Q |
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| T |
10341202 |
ttgtttc |
10341208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 10340840 - 10340882
Alignment:
| Q |
7 |
tttggtgttggacttaagaaaggactacaaggcatgcttatgc |
49 |
Q |
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| T |
10340840 |
tttgatgttggacttaagaaaggactactatgcatgcttatgc |
10340882 |
T |
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