View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_10 (Length: 507)
Name: NF9181_low_10
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 14839123 - 14838968
Alignment:
| Q |
1 |
gctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14839123 |
gctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcata |
14839024 |
T |
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| Q |
101 |
atttaacaaaaataggttgatactcaataagaagaatgaaatagaggaaatgaagc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14839023 |
atttaacaaaaataggttgatactcaataagaagaatgaaatagaggaaatgaagc |
14838968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 43228055 - 43227906
Alignment:
| Q |
2 |
ctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcataa |
101 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43228055 |
ctctgaatagttaagcacaaacatctggatatgaaaataaagaaacacatattccataagcatatattttggagttatgctaaccaaggctaatgcataa |
43227956 |
T |
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| Q |
102 |
tttaacaaaaataggttgatactcaataagaagaatgaaatagaggaaatgaagc |
156 |
Q |
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|| ||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
43227955 |
ttcaacaaaaataggt-----atcaatcagaagcatgaaatagaggaaatgaagc |
43227906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 14838907 - 14838823
Alignment:
| Q |
217 |
tttagtaatagttgacataaagtttaaagagaaaagacttagaaactttacataaaattttgcacacctcagtatcaatctcacg |
301 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14838907 |
tttagaaatagttgacataaagtttaaagagaaaagatttagaaactttacataaaattttgcacacctcggtatcaatctcacg |
14838823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 43227824 - 43227727
Alignment:
| Q |
217 |
tttagtaatagttgacataaagtttaaagagaaaagacttagaaactttacataaaattttgcacacctcagtatcaatctcacgaacttcacataaa |
314 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||| |
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| T |
43227824 |
tttagaaatagttgacatgaagtttaaagagcaaaggtttagaaactttacataaaattttgcagacctcggtatcaatctcatgaacttcacgtaaa |
43227727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 27962567 - 27962722
Alignment:
| Q |
1 |
gctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27962567 |
gctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcata |
27962666 |
T |
|
| Q |
101 |
atttaacaaaaataggttgatactcaataagaagaatgaaatagaggaaatgaagc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27962667 |
atttaacaaaaataggttgatactcaataagaagaatgaaatagaggaaatgaagc |
27962722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 27962783 - 27962867
Alignment:
| Q |
217 |
tttagtaatagttgacataaagtttaaagagaaaagacttagaaactttacataaaattttgcacacctcagtatcaatctcacg |
301 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27962783 |
tttagaaatagttgacataaagtttaaagagaaaagatttagaaactttacataaaattttgcacacctcggtatcaatctcacg |
27962867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 30653298 - 30653252
Alignment:
| Q |
448 |
catatactaactcaatacatatcggcccaccaacatactgatgtcca |
494 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
30653298 |
catatacgaactcaatacataccggcccaccaacatactgatatcca |
30653252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 24455820 - 24455669
Alignment:
| Q |
1 |
gctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcata |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24455820 |
gctctgaatagttaagcaca--catctgtatatgaaaataaagaaacacat-ttc-ataagcatatattttggagctatgctaactaaggctaatgcata |
24455725 |
T |
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| Q |
101 |
atttaacaaaaataggttgatactcaataagaagaatgaaatagaggaaatgaagc |
156 |
Q |
| |
|
||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
24455724 |
attcaacaaaaataggatgatactcaatcagaagcatgaaatagaggaaatgaagc |
24455669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 24455608 - 24455511
Alignment:
| Q |
217 |
tttagtaatagttgacataaagtttaaagagaaaagacttagaaactttacataaaattttgcacacctcagtatcaatctcacgaacttcacataaa |
314 |
Q |
| |
|
||||| ||||||||| |||| | |||||||| |||| ||||| |||||||||||||||||||| || || |||||||||||||||||| |||||||| |
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| T |
24455608 |
tttagaaatagttgatataatgattaaagagcaaaggtttagatactttacataaaattttgcagacatcggtatcaatctcacgaactacacataaa |
24455511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 25433821 - 25433729
Alignment:
| Q |
24 |
atctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgctaactaaggctaatgcataatttaacaaaaatagg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25433821 |
atctgaatatgaaaataaagaaacaaatattctataagcatatattttggagttatgttaactaaggctaatgcataatttaacaaaaatagg |
25433729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 25433549 - 25433516
Alignment:
| Q |
6 |
gaatagttaagcacaaacatctgaatatgaaaat |
39 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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|
| T |
25433549 |
gaatagttaagcgcaaacatctgaatatgaaaat |
25433516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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