View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9181_low_13 (Length: 457)

Name: NF9181_low_13
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9181_low_13
NF9181_low_13
[»] chr8 (11 HSPs)
chr8 (128-441)||(3171480-3171793)
chr8 (181-401)||(3139900-3140120)
chr8 (184-419)||(3168048-3168283)
chr8 (183-297)||(2909011-2909125)
chr8 (191-293)||(2913958-2914060)
chr8 (181-245)||(2982569-2982633)
chr8 (184-395)||(3280228-3280439)
chr8 (187-278)||(3004626-3004717)
chr8 (190-265)||(2707759-2707834)
chr8 (350-401)||(3004503-3004554)
chr8 (352-398)||(2709175-2709221)
[»] chr7 (2 HSPs)
chr7 (182-441)||(3916874-3917133)
chr7 (182-441)||(7161602-7161861)
[»] scaffold0065 (1 HSPs)
scaffold0065 (187-394)||(47701-47908)
[»] chr1 (1 HSPs)
chr1 (184-307)||(10753402-10753525)
[»] chr6 (1 HSPs)
chr6 (352-398)||(18357900-18357946)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 128 - 441
Target Start/End: Original strand, 3171480 - 3171793
Alignment:
Q  128 aactttgacagtgtttttaagagaatattggtgccttaaatttaagaatacctttttaagattatgtttggaatgtgagcaattttgggccacgttgcac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3171480 aactttgacagtgtttttaagagaatattggtgccttaaatttaagaatacctttttaagattatgtttggaatgtgagcaattttgggccacgttgcac 3171579  T
Q  228 ttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtctgtaatttggcaagatggggcattcttccgggcagcgaagccaa 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3171580 ttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtctgtaatttggcaagatggggcattcttccgggcagcgaagccaa 3171679  T
Q  328 attttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatccagtctggcaatgcctttagatacgaacaattgcaaaatttaatattt 427  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3171680 attttcacagtactcgatggtgatatgctgaagtgacgagaggttgcaaatccagtctggcaatgcctttagatacgaacaattgcaaaatttaatattt 3171779  T
Q  428 cgcaaggaaggaag 441  Q
    ||||||||||||||    
T  3171780 cgcaaggaaggaag 3171793  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 181 - 401
Target Start/End: Original strand, 3139900 - 3140120
Alignment:
Q  181 ttttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagg 280  Q
    |||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||  ||||||||||   | || ||||    
T  3139900 ttttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacattcttcaattaaatcaggacaatcagcaatttgtagg 3139999  T
Q  281 gtctgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatcc 380  Q
    |||||||||||||||||  | ||||||| | |||||||||||||||||  ||||||||||   |   ||||| | |||||||||||||||||||||||||    
T  3140000 gtctgtaatttggcaaggcgaggcattccttcgggcagcgaagccaaacattcacagtccaaaagattgatacgatgaagtgatgagaggttgcaaatcc 3140099  T
Q  381 agtctggcaatgcctttagat 401  Q
    | ||||||||||||| |||||    
T  3140100 aatctggcaatgcctctagat 3140120  T

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Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 184 - 419
Target Start/End: Original strand, 3168048 - 3168283
Alignment:
Q  184 taagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtc 283  Q
    ||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||| |||||||||||| ||| || |||||  ||| || ||| |||||     
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggta 3168147  T
Q  284 tgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatccagt 383  Q
    |||||||||| |||| ||||||||| | |||||||||||||||||||   |||   ||  ||| |||||||||||||||| ||||| ||||||||||| |    
T  3168148 tgtaatttggaaagacggggcattccttcgggcagcgaagccaaattacgacatctctgaatgctgatatgctgaagtgaggagagattgcaaatccaat 3168247  T
Q  384 ctggcaatgcctttagatacgaacaattgcaaaatt 419  Q
    |||||||| |||||||||  ||||||||||||||||    
T  3168248 ctggcaatacctttagatctgaacaattgcaaaatt 3168283  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 2909011 - 2909125
Alignment:
Q  183 ttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggt 282  Q
    |||||||||||||||| |||||||||| ||||||||| || ||| ||||||| | |||||| |||| || ||| || |||||  |||||| |||||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgtttgcgcctcacactctttaactaacaggggacatccaatgatttctagggt 2909110  T
Q  283 ctgtaatttggcaag 297  Q
    || |||||| |||||    
T  2909111 ctttaatttagcaag 2909125  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 2913958 - 2914060
Alignment:
Q  191 atgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtctgtaatt 290  Q
    |||||||||||||||||||||||||||||  || |||||| || || ||||||||||| ||  || || ||||| || |||| |||||||||||||||||    
T  2913958 atgtttggaatgtgagcaattttgggccaattttcacttgattctgcctcacattctttaaccaacaggggacattcgatgatttctagggtctgtaatt 2914057  T
Q  291 tgg 293  Q
    |||    
T  2914058 tgg 2914060  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 2982633 - 2982569
Alignment:
Q  181 ttttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacatt 245  Q
    |||||||||||||||||| |||||||||||||| | ||| ||||||||||||| |||||||||||    
T  2982633 ttttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacatt 2982569  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 395
Target Start/End: Original strand, 3280228 - 3280439
Alignment:
Q  184 taagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtc 283  Q
    ||||||||| ||||| |  ||| | ||||||||||| ||| ||| ||||||||||| ||||||||||| |||||  |||||  |||||| ||||| ||||    
T  3280228 taagattatctttggtacatgacctattttgggccatgtttcacctgtttgtgtctgacattcttcaactaaaatgggacatccaatgatttctatggtc 3280327  T
Q  284 tgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatccagt 383  Q
    ||||| || |  ||| ||||||||| | | ||||| || |||||||||   || || |  |   | | |||||||||||||||||| ||||| ||||| |    
T  3280328 tgtaagttagttagacggggcattccttcaggcagtgatgccaaatttatgcaatcatacaccctaagatgctgaagtgatgagagattgcatatccaat 3280427  T
Q  384 ctggcaatgcct 395  Q
    ||||||||||||    
T  3280428 ctggcaatgcct 3280439  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 3004717 - 3004626
Alignment:
Q  187 gattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttcta 278  Q
    |||||||||||| |||||||||||||| | |||  |||||||||||| |||||  |||||||||| |||||| ||||| | ||||| |||||    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtctggcattcttcaactaaaagtggacatttaatgaattcta 3004626  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 2707759 - 2707834
Alignment:
Q  190 tatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaa 265  Q
    ||||||||| |||||| ||||||| | ||| ||||||||||||| ||||| |||||| |||| ||| || ||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaa 2707834  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 3004554 - 3004503
Alignment:
Q  350 atatgctgaagtgatgagaggttgcaaatccagtctggcaatgcctttagat 401  Q
    ||||| || ||||||||||||||||| ||||| ||||| |||||||||||||    
T  3004554 atatgatgcagtgatgagaggttgcatatccaatctggtaatgcctttagat 3004503  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 2709175 - 2709221
Alignment:
Q  352 atgctgaagtgatgagaggttgcaaatccagtctggcaatgccttta 398  Q
    ||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  2709175 atgctgaagtgatgagatgttgcatatccaatctggtaatgccttta 2709221  T

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Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 182 - 441
Target Start/End: Original strand, 3916874 - 3917133
Alignment:
Q  182 tttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctaggg 281  Q
    ||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| || |||||   ||||| ||||||||    
T  3916874 tttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttctaggg 3916973  T
Q  282 tctgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatcca 381  Q
    ||||||||||||||||| | ||||||| | ||||||||||| ||||||||   |||||  | ||||| |||||||||||||| |||| |||| |||||||    
T  3916974 tctgtaatttggcaagacgtggcattccttcgggcagcgaatccaaatttatgcagtctgcaatggttatatgctgaagtgaggagatgttgaaaatcca 3917073  T
Q  382 gtctggcaatgcctttagatacgaacaattgcaaaatttaatatttcgcaaggaaggaag 441  Q
     || ||||||||| ||||||  |||||||  ||||||||||| ||| ||| |||||||||    
T  3917074 atcaggcaatgccattagatctgaacaatgccaaaatttaattttttgcagggaaggaag 3917133  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 182 - 441
Target Start/End: Complemental strand, 7161861 - 7161602
Alignment:
Q  182 tttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctaggg 281  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || || ||  ||| ||||||||    
T  7161861 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcacattcttcaagtaagagggggcactcggtgatttctaggg 7161762  T
Q  282 tctgtaatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatcca 381  Q
    ||||||| ||||| ||| | | |||||||  |||||| ||||||||||||| |||||| |  |||||||||||||||||||| |||||||||||||||||    
T  7161761 tctgtaagttggccagacgagacattcttttgggcagtgaagccaaattttgacagtctttaatggtgatatgctgaagtgacgagaggttgcaaatcca 7161662  T
Q  382 gtctggcaatgcctttagatacgaacaattgcaaaatttaatatttcgcaaggaaggaag 441  Q
     || ||||||| ||||||||  |||||||   ||| || ||||||| ||||||| |||||    
T  7161661 atccggcaatgactttagatcggaacaatatgaaacttcaatattttgcaaggatggaag 7161602  T

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Target: scaffold0065 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 187 - 394
Target Start/End: Complemental strand, 47908 - 47701
Alignment:
Q  187 gattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtctgt 286  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| ||| ||| ||| |   |||| | ||||| |||||||||||||    
T  47908 gattatgtttggaatgtgagaaattttgggcaatgttgcacttgtttgtgtctcacactctgcaaataagaagcgacatttaatgatttctagggtctgt 47809  T
Q  287 aatttggcaagatggggcattcttccgggcagcgaagccaaattttcacagtcctcgatggtgatatgctgaagtgatgagaggttgcaaatccagtctg 386  Q
    ||||||| |||    ||||||| | |||||||||||| |||||    ||| | ||| ||  ||| |||||||||||| ||||| ||||||||||| ||||    
T  47808 aatttggaaaggcaaggcattccttcgggcagcgaagacaaatcacgacaatgctcaattttgacatgctgaagtgaggagagtttgcaaatccaatctg 47709  T
Q  387 gcaatgcc 394  Q
    ||| ||||    
T  47708 gcagtgcc 47701  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 10753402 - 10753525
Alignment:
Q  184 taagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtc 283  Q
    ||||| ||||||||| |||||||| ||||| ||||  ||||||||||||| | ||  |||||| |||| ||| || ||||| ||||||| ||||| |||     
T  10753402 taagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctcaattaagagtggacattcaatgatttctaaggtt 10753501  T
Q  284 tgtaatttggcaagatggggcatt 307  Q
    | ||| |||| |||| | ||||||    
T  10753502 tttaagttggtaagacgaggcatt 10753525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 398
Target Start/End: Complemental strand, 18357946 - 18357900
Alignment:
Q  352 atgctgaagtgatgagaggttgcaaatccagtctggcaatgccttta 398  Q
    ||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  18357946 atgctgaagtgatgagatgttgcatatccaatctggtaatgccttta 18357900  T

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