View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_16 (Length: 423)
Name: NF9181_low_16
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 441803 - 441470
Alignment:
| Q |
14 |
ttatactaaattctacgatttgaacttgaaaatttattacccaaaaaacgaaaacatttcagatttaaacaagttgagttcagttggacccgatctcgaa |
113 |
Q |
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| T |
441803 |
ttatactaaattctacgatttgaacttgaacatttattacccaaaaa-cgaaaacatttcagatttgaacaagttgagttcagttggacccgatctcgaa |
441705 |
T |
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| Q |
114 |
taaattgaaataaaataaaatttagcttcatttggattatcgaatcagattgaatgggtcacatgaaccctaaaacatctttaattgagaagtctttttc |
213 |
Q |
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| T |
441704 |
taaattgaaataaaatagaagttagcttcatttggattatcgaatcagattgaatgggtcacctgtaccctaaaacatctttaattgagaagtctttttc |
441605 |
T |
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| Q |
214 |
aaaatttagattttggtataaaggtaacacaaaactcatgtttagttgtgttcatgggtgtggatcggcatacaaacctagtgagtcaacccgactcaac |
313 |
Q |
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| T |
441604 |
aaaatttagattttggtataaaggtaacacacaactcatgtttagttgtgttcatgggtgtggatcggcatacaaacctagtgagtcaacccgactcaac |
441505 |
T |
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| Q |
314 |
ccacattacctaagcctaattatttatggatctat |
348 |
Q |
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| T |
441504 |
ccacattgcctaagcctaattatttatggatctat |
441470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 441022 - 440961
Alignment:
| Q |
344 |
tctattcttattattggtgggctagtacatattttttagattgaaggtgtctaatatgtgtt |
405 |
Q |
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| T |
441022 |
tctattcttattattggtgggctagtacatattttttagattgaaggtgtataatatgtgtt |
440961 |
T |
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