View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_2 (Length: 628)
Name: NF9181_low_2
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 610
Target Start/End: Original strand, 4883838 - 4884443
Alignment:
| Q |
1 |
attaaaaaggaacggatgtagtaataatagtaatagtaaagtctaaacaaacatactataacaaaaatatacatttgggatttaattggataagaactta |
100 |
Q |
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| T |
4883838 |
attaaaaaggaatggatgtagtaataatagtaatagtaaagtctaaacaaacatactataacaaaaatatacatttgggatttaattggataagaactta |
4883937 |
T |
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| Q |
101 |
tgatatgtatggtatgtgatggaagcatcatgtcatgctctctgcgttaaagaatgaatgacagacaccaatgaatattgaacagaacacactatttttt |
200 |
Q |
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| T |
4883938 |
tgatatgtatggaatgtgatggaagcattatgtcatgctctctgcgttaaagaatga----cagacaccaatgaatattgaacagaacacactatttttt |
4884033 |
T |
|
| Q |
201 |
ccctctatgtgtgaatgggaattaataacagtgaatggattactctaatggtagcaacaacataacatggatcatgtctcaatcacattctattatgatg |
300 |
Q |
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| T |
4884034 |
ccctctatgtgtgaatgggaattaataacagtgaatggattactctaatggtagcaacaacataacatggatcatgtctcaatcacattctattatgatg |
4884133 |
T |
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| Q |
301 |
caataagctttatgaatgcaccacaaccagacacaatagtaatggcatccnnnnnnncttttctcctgtattccaatcatttgatctcttctctcaatag |
400 |
Q |
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| T |
4884134 |
caataagctttatgaatgcaccaaaaccagacacaatagtaatggcatcctttttttcttttctcctgtattccaatcatttgatctcttctctcaatag |
4884233 |
T |
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| Q |
401 |
tttttatctttccatgtgcacttcaacttttaagcttcatcatccattaaaaaccaaaataaataaattcaaacctttacatatttcttgccttatttga |
500 |
Q |
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| T |
4884234 |
tttttatctttccatgtgcacttcaacttttaagcttcatcatccattaaaaaccaaaataaataaattcaaacctttacatatttcttgccttatttga |
4884333 |
T |
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| Q |
501 |
accaaaaccaaaacactagtgatgaacaaaccctcaaaattatacaaaagaacttgnnnnnnngaaagagaaaatagcaatcaatcaattattacttgca |
600 |
Q |
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| T |
4884334 |
accaaaaccaaaacactagtgatgaacaaaccctcaaaattatacaaaagaacttgaaaaaaagaaagagaaaatagcaatcaatcaattattaattgca |
4884433 |
T |
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| Q |
601 |
tatttctaat |
610 |
Q |
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| T |
4884434 |
tatttctaat |
4884443 |
T |
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