View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9181_low_25 (Length: 321)
Name: NF9181_low_25
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 41716539 - 41716253
Alignment:
| Q |
17 |
acatcattttattgtttcttctgttattatgtgggtgatgttgaaaatgaactggttagcatctggtgactagtgaagtttctcagattacattttgttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41716539 |
acatcattttattgtttcttctgttattatgtgggtgatgttgaaaatgaactggttagcatctggtgactagtgaaatttctcagattacattttgttg |
41716440 |
T |
|
| Q |
117 |
actttggatattgtatagaatgaaaaccttggtattttttggagtgtcctatgtatgagaatacgagggttgtcttgtctcattttatgtacttggttta |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41716439 |
actttggatattgtatagaatgaaaactttggtattttttggagtgtcctatgtatgagaatacgagggttgtcttgtctcattttatgtacttggttta |
41716340 |
T |
|
| Q |
217 |
ttggtcttctgctattttgtcttggcgttaaataaataactaccacatatatgtttgcactcatgtgtgtggctcaaaggaagattt |
303 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41716339 |
ttggtcttctgctattttgccttggcgttaaataaataactaccacatatatgtttgcactcatgtgtgtggctcaaaggaagattt |
41716253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University