View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_28 (Length: 314)
Name: NF9181_low_28
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9346544 - 9346245
Alignment:
| Q |
1 |
atccttttgagttcaagactcttgggtgatcatggtttagagatgattcaagcatgaagacttcatcattttggtcttaactcaatctcactcaaagttg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9346544 |
atccttttgagttcaagactctagggtgatcatggtttagagatgattcaagcatgaagacttcatcattttggtcttaactcaatctcacttaaagttg |
9346445 |
T |
|
| Q |
101 |
gatgatcttagcaagagagcatgcattagggtttgattgtagaagcttagaagtttgaagttgtaccagaatcttaggtgagttctctagatagaaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9346444 |
gatgatcttagcaagagagcatgcattagggtttgattgtagaagcttagaagtttgaagttgtaccagaatcttaggtgagttctctagatagaactcc |
9346345 |
T |
|
| Q |
201 |
ttcccttgaatgattatgttatgtgagaaaatcttaatgaacattagtttatgtatatccatgattagtgccatctttatgtggattgttgttgaatgat |
300 |
Q |
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| T |
9346344 |
ttcccttaaatgattatgttatgtgagaaaatcttaatgaacactagtttatgtatatccatgattagtgccatctttatgtggattgttgttgaatgat |
9346245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 23296098 - 23295963
Alignment:
| Q |
1 |
atccttttgagttcaagactcttgggtgatcatggtttagagatgattcaagcatgaagacttcatcattttggtcttaactcaatctcactcaaagttg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
23296098 |
atccttttgagttcaacactcttgggtgatcatggtttagagatgattcaagcatgatgacttcgtcattttggtcttaactcaagctcaatcaaagttg |
23295999 |
T |
|
| Q |
101 |
gatgatcttagcaagagagcatgcattagggtttga |
136 |
Q |
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| T |
23295998 |
gatgatcttagcaagagagcaagagttagggtttga |
23295963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 11244689 - 11244757
Alignment:
| Q |
127 |
tagggtttgattgtagaagcttagaagtttgaagttgtaccagaatcttaggtgagttctctagatagaa |
196 |
Q |
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||||||||| |||||||||| ||| ||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
11244689 |
tagggtttggttgtagaagcataggagtttgaagtt-taccagaaatctaggtgagttctctagaaagaa |
11244757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 29790101 - 29790297
Alignment:
| Q |
1 |
atccttttgagttcaagactcttgggtgatcatggtttagagatgattcaagcatgaagacttcatcattttggtct-taactcaatctcactcaaagtt |
99 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | || ||||||| || ||||||| || ||| |||||| |
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| T |
29790101 |
atccttttgagttcaaaactcttgggtaatcatggtttagagatgattcaagcatgaaggttacacaattttgggctcaaactcaagcttactgaaagtt |
29790200 |
T |
|
| Q |
100 |
ggatgatcttagcaag-agagcatgcattagggtttgattgtagaagcttagaagtttgaagttgtaccagaatcttaggtgagttctctagatagaa |
196 |
Q |
| |
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|||||||||| | ||| |||| ||||||||| || |||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
29790201 |
ggatgatcttggaaagctttacatgttctagggtttggttttagagacttagaagcttgaagtt-caccagaattttaggtgagttctctagatagaa |
29790297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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