View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_3 (Length: 620)
Name: NF9181_low_3
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 161 - 620
Target Start/End: Original strand, 30080029 - 30080488
Alignment:
| Q |
161 |
caattggataatagcaatgactttttaagtgtgttgtattgcaaattcttttaggtagacttctctggaacagttgatgaggagttcctgaagaatttgg |
260 |
Q |
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| T |
30080029 |
caattggataatagcaatgactttttaagtgtgttgtattgcaaattcttttaggtagacttctctggaacagttgatgaggagttcctgaagaatttgg |
30080128 |
T |
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| Q |
261 |
gattagaaaagggaacaaggaaacttgtaaatcatgaggaaagaggtagagttttgcaagccatggatggttgcagctataaagctgcggctggtggatc |
360 |
Q |
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| T |
30080129 |
gattagaaaagggaacaaggaaacttgtaaatcatgaggaaagaggtagagttttgcaagccatggatggttgcagctataaagctgctgctggtggatc |
30080228 |
T |
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| Q |
361 |
tctttctaatactttagttgccttggcaaggcttggaggtcgctctcttcgagatcctgctattaatgtggcaatggctggcagtgtggcgagcgatcta |
460 |
Q |
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| T |
30080229 |
tctttctaatactttagttgccttggcaaggcttggaggtcgctctcttcgagatcctgctataaatgtggcaatggctggcagtgtggcgagcgatcta |
30080328 |
T |
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| Q |
461 |
ttgggtggcttctacaggtttgacctcgtaactgcactcttctctgatcaaattgttatggctacttaacttggggctcttttagtttcatataaggaag |
560 |
Q |
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| T |
30080329 |
ttgggtggcttctacaggtttgacctcgtaactgcactcttctctgatcaaattgttatggctacttaacttgaggctcttttagtttcatataaggaag |
30080428 |
T |
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| Q |
561 |
aagttaatttgtaacttgtccttctctcatttctatactattatgagtgatagaataatc |
620 |
Q |
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| T |
30080429 |
aagttaatttgtaacttgtccttctctcatttctatactattatgagtgatagaataatc |
30080488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 30079678 - 30079835
Alignment:
| Q |
7 |
tgtaacttgtaagaatttagtcatgcttttctattttgtttgctttccttcatgcagtcaacatattataatcccttcaattattgtttatttgctggga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079678 |
tgtaacttgtaagaatttagtcatgcttttctattttgtttgctttccttcatgcagtcaacatattataatcccttcaattattgtttatttgctggga |
30079777 |
T |
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| Q |
107 |
aatctcatgtatactttgatttcattgtgttgaaattaatatagatacatcatacaat |
164 |
Q |
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| T |
30079778 |
aatctcatgtataatttgatttcattgtgttgaaattaatatagatacatcatacaat |
30079835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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