View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_30 (Length: 302)
Name: NF9181_low_30
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 9091630 - 9091346
Alignment:
| Q |
18 |
agattatcaagaaaaagataaagccaaaaattatttactgcattgcatattacacgtaccgtgttatagtctaattgatgttataaaatcttacaagttg |
117 |
Q |
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| T |
9091630 |
agattatcaagaaaaagataaagccaaaaattatttactgcattgtatattacacgtaccgtgttatagtctaattgatgttataaaatcttacaagttg |
9091531 |
T |
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| Q |
118 |
agtatgtcatactcttgcaagagagataatgcaacgataaatcagaatcatgcacacatactctgtagatgatcctcaatccactaaatcttcaatattt |
217 |
Q |
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| T |
9091530 |
agtatgtcatactcttgcaagagagataatgcaacgataaatcagaatcatgcacacatactctgtagatgatcctcaatccactaaattttcaatattt |
9091431 |
T |
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| Q |
218 |
cacgaactatttaaaagtaatctgtctttgaaaatataaaacttaccggaatgatttgagtgctgtaacgcgcccaaataaatcc |
302 |
Q |
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| T |
9091430 |
cacgaactatttaaaagtaatctgtctttgaaaatataaaacttaccggaatgatttgagtgctgtaacgcgcccaaataaatcc |
9091346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 9095737 - 9095642
Alignment:
| Q |
57 |
gcattgcatattacacgtaccgtgttatagtctaattgatgttataaaatcttacaagttgagtatgtcatactcttgcaagagagataatgcaac |
152 |
Q |
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| T |
9095737 |
gcattgcatattacatgtaccatgttatagtctaattgatgttacagaatcttacaagttgagtatgtgatactcttgcaagagagataatgcaac |
9095642 |
T |
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