View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_33 (Length: 250)
Name: NF9181_low_33
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 45099359 - 45099461
Alignment:
| Q |
145 |
cgcgaacaaaggagttccctttagcttcaccagaagcaacaattctgataccatcaggagaccactgaagatcatcgatccttccagaaagaacacgaaa |
244 |
Q |
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| T |
45099359 |
cgcgaacaaaggagttccctttagcttcaccagaagcaacaattctgataccatcaggagaccactgaagatcatcgatccttccagaaagaacacgaaa |
45099458 |
T |
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| Q |
245 |
ctc |
247 |
Q |
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||| |
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| T |
45099459 |
ctc |
45099461 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 48886339 - 48886298
Alignment:
| Q |
203 |
agaccactgaagatcatcgatccttccagaaagaacacgaaa |
244 |
Q |
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| T |
48886339 |
agaccactgaagatcatcgatccgaccagatagaacacgaaa |
48886298 |
T |
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