View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_36 (Length: 243)
Name: NF9181_low_36
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9346559 - 9346794
Alignment:
| Q |
1 |
agggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgtttcttgctcca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9346559 |
agggtggaattcgaccttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgtttcttgctcca |
9346658 |
T |
|
| Q |
101 |
acatacttatatactctttgcttgcaattactaaaatgcccttttccttaaacgtgtctattatgtcgctgataattaaatccgtgtttaactgactata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |
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| T |
9346659 |
acatacttatatactctttgcttgcaattactaaaatgccctttgccttaaacgtgtctattctgtcgctgataattaaatccgtgcttaactgacttta |
9346758 |
T |
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| Q |
201 |
cgtgataaaacattctctagcatacttgatgtccat |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
9346759 |
cgtgataaaacattctctagcatacttgatttccat |
9346794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 6420944 - 6420859
Alignment:
| Q |
2 |
gggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagag-tttctagtgagagaaaca-acatgaaaaatgaa |
86 |
Q |
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||||||||| ||| |||||||||||||| ||||||||||| || || |||||| ||| ||| |||||||||| ||| |||||||||| |
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| T |
6420944 |
gggtggaatacgaccttctagagagaggaaggagaaaattatgtcc-taagagttttttagagagagaaacatacaagaaaaatgaa |
6420859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23296113 - 23296342
Alignment:
| Q |
1 |
agggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgtttcttgctcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23296113 |
agggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgtttcttgctcca |
23296212 |
T |
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| Q |
101 |
acatacttatatactctttgcttgcaattactaaaatgcccttttccttaaacgtgtctattatgtcgctgataattaaatccgtgtttaactgactata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||| || ||||| | | || |
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| T |
23296213 |
acatacttatatactccttgcttgcaattactaaaatatcctttgccttaaacgtgtttatcctgtcgctgataattaaatccatgcttaaccaaattta |
23296312 |
T |
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| Q |
201 |
cgtgataaaacattctctagcatacttgat |
230 |
Q |
| |
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| ||||||||||||||| |||||||||| |
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| T |
23296313 |
cctgataaaacattctccgtcatacttgat |
23296342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29790086 - 29790030
Alignment:
| Q |
1 |
agggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagttt |
57 |
Q |
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|||||| ||||||| ||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
29790086 |
agggtgaaattcgaccttctagagagaggggggagaaaattttgctcttaagagttt |
29790030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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