View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9181_low_38 (Length: 242)
Name: NF9181_low_38
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 13400851 - 13401068
Alignment:
| Q |
12 |
atcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattggttattttcattgatgtttttaagttgtcgtgattcatagtgttg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
13400851 |
atcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattgttgattttcattgatgtttttaatttgttgtgattcatagtgttg |
13400950 |
T |
|
| Q |
112 |
aagtgttgattttatgtttttaattatcgttaaagtcttgtggttctgagtgctaaattgttgg-tttttgctttgtagagcgaagccctccgattgagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400951 |
aagtgttgattttatgtttttaattatcgttaaagtcttgtggttctgagtgctaaattgttggttttttgctttgtagagcgaagccctccgattgagg |
13401050 |
T |
|
| Q |
211 |
aagttattcaatctggtg |
228 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13401051 |
aagttattcaatctggtg |
13401068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 54862859 - 54862783
Alignment:
| Q |
13 |
tcaacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattggttattttcattgatgtttttaa |
89 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||||||| ||||| || | ||||| ||||||||||||| |
|
|
| T |
54862859 |
tcaacaactcgaagcaactacggaatttcggaagcgtctttccatcggtaactgttgattttatttgatgtttttaa |
54862783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 54626509 - 54626584
Alignment:
| Q |
14 |
caacaacttgaagcaactacgcaatttcggaagcttctttccataggtaattggttattttcattgatgtttttaa |
89 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| ||||||| | ||||| | | ||||| ||||||||||||| |
|
|
| T |
54626509 |
caacaactcgaagcaactacggaatttcggaagcgtctttccgttggtaaccgttgattttatttgatgtttttaa |
54626584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 50192635 - 50192591
Alignment:
| Q |
184 |
ttgtagagcgaagccctccgattgaggaagttattcaatctggtg |
228 |
Q |
| |
|
||||||| || | ||||||||||||||| |||||||||||||||| |
|
|
| T |
50192635 |
ttgtagatcggacccctccgattgaggaggttattcaatctggtg |
50192591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University