View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9181_low_4 (Length: 612)
Name: NF9181_low_4
Description: NF9181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9181_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 607
Target Start/End: Complemental strand, 36606574 - 36605978
Alignment:
| Q |
11 |
ggacatcatcggttacctaa---tcatctgccacatgtttctagagagcctttgaaggcttttgaaagtagtaccaaaggaatgcaagcaaccagcaaca |
107 |
Q |
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| T |
36606574 |
ggacatcatcggttgcctaacggtcatctgccacatgtttctaaagagcctttgaaggcttttgaaagtagtaccaaaggaatgcaagcaaccagcaac- |
36606476 |
T |
|
| Q |
108 |
attctgtttcatcttcagtctccattcaaggatttgaactttttgacttcgcaaacacttttattgacttgagtgaaccaacaccccctgaacatgggag |
207 |
Q |
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| T |
36606475 |
--tctgtttcatcttcagtctctattcaaggatttgaactttttgactttgcaaacacttttattgacttgagtgaaccaacaccccctgaacatgggag |
36606378 |
T |
|
| Q |
208 |
ttttaatcacactgaaattgtgggatcacgtgccaacagtgatggtcctgatgaaaatatttctggtgaatcctctccgtttacaccaacttttcaaaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
36606377 |
ttttaatcacactgaaattgtgggatcacgtgccaacagtggtggtcctgatgaaaatatttctggtgaatcctctcagtttacaccaacttttcagaat |
36606278 |
T |
|
| Q |
308 |
accattacttgtaatgagaaagtaagtcccaggttaactctggatcactcagtaatgtatgatagttttcttataaatcaaacaactacatctgatgccg |
407 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36606277 |
accattactcgtaatgagaaagtaagtcccaggttaactctggatcactcagtaatgtatgatagttttcttataaatcaaacaactacatctgatgtcg |
36606178 |
T |
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| Q |
408 |
ttgagtttgatgttccgtctgccaaagtcacacaagaaatcaaaaaccttcaagatatttgtaaggaaatggcttcgatcaattctctcaaacattcact |
507 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36606177 |
ttgagtgtgatgttccgtctgccaaagtcacacaagaaatcaaaaaccttcaagatatttgtaaggaaatggcttcaatcaattctctcaaacattcact |
36606078 |
T |
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| Q |
508 |
ttccatttctggaaaaaagtctgtttgtgaagttagtccagcaagcttgccaactaataggcctcataaagttagccagccaaagctgatgtccatctca |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
36606077 |
ttccatttctggaaaaaagtctgtttgtgaagttagtccagtaagcttgccaaataataggcctcataaagttagccagccaaagcttatgtacatctca |
36605978 |
T |
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