View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9182_high_11 (Length: 258)

Name: NF9182_high_11
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9182_high_11
NF9182_high_11
[»] chr3 (36 HSPs)
chr3 (5-242)||(7607518-7607755)
chr3 (12-86)||(14624235-14624309)
chr3 (31-87)||(47891307-47891363)
chr3 (13-87)||(14964904-14964979)
chr3 (13-76)||(36667278-36667342)
chr3 (13-68)||(36375067-36375122)
chr3 (13-85)||(252121-252194)
chr3 (31-87)||(28813931-28813987)
chr3 (13-87)||(18020009-18020084)
chr3 (13-87)||(25848485-25848560)
chr3 (14-87)||(47069604-47069678)
chr3 (15-87)||(43650061-43650134)
chr3 (31-87)||(26724104-26724160)
chr3 (31-79)||(26976491-26976539)
chr3 (31-87)||(32186556-32186612)
chr3 (19-87)||(40209862-40209929)
chr3 (31-87)||(50332527-50332583)
chr3 (13-87)||(13902991-13903066)
chr3 (32-87)||(25848382-25848437)
chr3 (13-68)||(30955012-30955067)
chr3 (13-68)||(30970824-30970879)
chr3 (13-87)||(32186660-32186735)
chr3 (13-87)||(47069716-47069791)
chr3 (14-87)||(3169544-3169618)
chr3 (30-87)||(26724198-26724256)
chr3 (13-78)||(27657997-27658062)
chr3 (30-87)||(40209768-40209824)
chr3 (13-68)||(3169728-3169784)
chr3 (13-68)||(18020088-18020144)
chr3 (13-68)||(39714625-39714681)
chr3 (31-87)||(40286332-40286388)
chr3 (13-87)||(40286436-40286509)
chr3 (13-68)||(46337517-46337573)
chr3 (13-68)||(47891124-47891180)
chr3 (31-87)||(47891203-47891259)
chr3 (5-68)||(50332699-50332763)
[»] chr6 (22 HSPs)
chr6 (13-87)||(17136919-17136994)
chr6 (13-87)||(21598633-21598708)
chr6 (14-73)||(364199-364258)
chr6 (13-87)||(21598520-21598595)
chr6 (14-87)||(9982746-9982820)
chr6 (30-87)||(2761494-2761551)
chr6 (5-68)||(10356328-10356392)
chr6 (31-87)||(17342628-17342684)
chr6 (31-87)||(35050630-35050686)
chr6 (13-88)||(35225473-35225549)
chr6 (13-80)||(364061-364128)
chr6 (13-86)||(13812383-13812457)
chr6 (14-86)||(10356450-10356523)
chr6 (13-68)||(19557905-19557961)
chr6 (31-79)||(24059759-24059807)
chr6 (13-87)||(13273253-13273328)
chr6 (30-87)||(2761589-2761646)
chr6 (31-68)||(9982936-9982973)
chr6 (31-68)||(35050847-35050884)
chr6 (13-68)||(10356528-10356584)
chr6 (31-87)||(17342534-17342590)
chr6 (13-68)||(21598712-21598768)
[»] chr4 (30 HSPs)
chr4 (13-87)||(45038363-45038438)
chr4 (13-87)||(17232003-17232078)
chr4 (17-87)||(41083241-41083312)
chr4 (13-87)||(24684235-24684308)
chr4 (13-87)||(51950545-51950620)
chr4 (5-79)||(9999357-9999431)
chr4 (14-87)||(12592255-12592329)
chr4 (13-85)||(40395174-40395247)
chr4 (15-87)||(53863505-53863578)
chr4 (13-80)||(2787962-2788028)
chr4 (13-87)||(12592377-12592452)
chr4 (31-86)||(24684142-24684197)
chr4 (5-87)||(26782360-26782442)
chr4 (13-68)||(12498634-12498691)
chr4 (29-87)||(26782480-26782538)
chr4 (13-78)||(41083129-41083195)
chr4 (29-87)||(45787221-45787279)
chr4 (14-87)||(53863393-53863467)
chr4 (13-46)||(12592195-12592228)
chr4 (13-68)||(2469914-2469970)
chr4 (13-68)||(7246290-7246346)
chr4 (31-87)||(12498807-12498863)
chr4 (13-87)||(9999477-9999552)
chr4 (13-87)||(40395286-40395361)
chr4 (31-68)||(50290404-50290441)
chr4 (13-68)||(2788160-2788216)
chr4 (5-68)||(7246059-7246123)
chr4 (31-87)||(24369251-24369307)
chr4 (13-68)||(41083320-41083376)
chr4 (31-79)||(41519347-41519395)
[»] chr2 (22 HSPs)
chr2 (13-87)||(31630140-31630215)
chr2 (17-87)||(31630263-31630332)
chr2 (13-87)||(9500980-9501055)
chr2 (32-86)||(4188657-4188711)
chr2 (31-87)||(11791786-11791842)
chr2 (13-68)||(36217209-36217263)
chr2 (13-73)||(36694515-36694576)
chr2 (31-87)||(5009257-5009313)
chr2 (31-87)||(25895103-25895159)
chr2 (13-68)||(25895182-25895238)
chr2 (28-79)||(8035465-8035516)
chr2 (31-78)||(43699435-43699482)
chr2 (13-68)||(5009173-5009230)
chr2 (17-87)||(14166376-14166446)
chr2 (13-63)||(36217155-36217205)
chr2 (14-87)||(36694390-36694463)
chr2 (31-87)||(4189000-4189056)
chr2 (29-85)||(4511940-4511996)
chr2 (31-87)||(5009361-5009416)
chr2 (31-87)||(30265473-30265529)
chr2 (16-87)||(33847621-33847693)
chr2 (5-64)||(33847703-33847763)
[»] chr5 (40 HSPs)
chr5 (13-86)||(28559310-28559384)
chr5 (13-87)||(16327173-16327248)
chr5 (31-87)||(7209882-7209938)
chr5 (5-87)||(1996209-1996292)
chr5 (13-87)||(25456350-25456425)
chr5 (5-79)||(23661946-23662019)
chr5 (5-79)||(23796551-23796624)
chr5 (13-87)||(35813486-35813560)
chr5 (30-87)||(12713072-12713131)
chr5 (30-87)||(12774336-12774395)
chr5 (13-87)||(16327286-16327361)
chr5 (13-87)||(28559423-28559498)
chr5 (5-87)||(36759670-36759753)
chr5 (30-87)||(4943086-4943144)
chr5 (34-87)||(38682792-38682845)
chr5 (5-57)||(12712428-12712480)
chr5 (5-57)||(12773692-12773744)
chr5 (13-68)||(19550114-19550170)
chr5 (31-87)||(20927939-20927995)
chr5 (13-68)||(23661894-23661950)
chr5 (13-68)||(23796620-23796676)
chr5 (13-68)||(35812182-35812238)
chr5 (31-87)||(36760785-36760841)
chr5 (13-79)||(5746170-5746237)
chr5 (33-68)||(10827143-10827178)
chr5 (14-49)||(10827183-10827218)
chr5 (13-68)||(25456291-25456346)
chr5 (13-68)||(25456541-25456596)
chr5 (31-86)||(28022136-28022191)
chr5 (13-87)||(35461511-35461586)
chr5 (14-87)||(10827292-10827366)
chr5 (13-66)||(35813566-35813620)
chr5 (30-79)||(5746302-5746351)
chr5 (31-68)||(20928082-20928119)
chr5 (30-79)||(35187993-35188042)
chr5 (35-80)||(35813386-35813431)
chr5 (13-61)||(1649403-1649451)
chr5 (31-79)||(7210260-7210308)
chr5 (13-64)||(35461706-35461758)
chr5 (31-87)||(37642888-37642944)
[»] chr8 (25 HSPs)
chr8 (13-87)||(27127949-27128024)
chr8 (13-68)||(15563860-15563915)
chr8 (5-87)||(24827424-24827507)
chr8 (14-87)||(6220371-6220444)
chr8 (17-87)||(41151484-41151555)
chr8 (13-75)||(41151605-41151668)
chr8 (29-87)||(27128062-27128120)
chr8 (31-87)||(9400013-9400070)
chr8 (13-73)||(24909605-24909666)
chr8 (13-77)||(29427952-29428017)
chr8 (16-87)||(20209338-20209410)
chr8 (16-87)||(20229046-20229118)
chr8 (13-68)||(27128142-27128197)
chr8 (31-86)||(28618825-28618880)
chr8 (34-76)||(15563941-15563983)
chr8 (15-68)||(24083297-24083351)
chr8 (31-68)||(14550277-14550314)
chr8 (13-57)||(27127892-27127937)
chr8 (13-68)||(6220449-6220505)
chr8 (31-87)||(9399910-9399965)
chr8 (13-80)||(20209454-20209522)
chr8 (13-80)||(20229162-20229230)
chr8 (13-49)||(24083257-24083293)
chr8 (13-68)||(27052483-27052539)
chr8 (13-67)||(41151673-41151729)
[»] chr7 (20 HSPs)
chr7 (13-86)||(6694718-6694792)
chr7 (31-87)||(29019342-29019398)
chr7 (31-87)||(11975541-11975597)
chr7 (13-68)||(27576597-27576653)
chr7 (13-87)||(30869587-30869662)
chr7 (14-87)||(4048400-4048474)
chr7 (5-85)||(27576520-27576601)
chr7 (13-68)||(29710586-29710642)
chr7 (13-68)||(31453048-31453104)
chr7 (31-87)||(40951724-40951780)
chr7 (31-87)||(40951831-40951887)
chr7 (31-87)||(43258338-43258394)
chr7 (16-87)||(44293850-44293922)
chr7 (32-87)||(27280709-27280764)
chr7 (13-86)||(3198286-3198360)
chr7 (14-87)||(29710507-29710581)
chr7 (31-68)||(42312793-42312830)
chr7 (24-68)||(4048479-4048523)
chr7 (13-87)||(11975627-11975703)
chr7 (13-80)||(44293966-44294034)
[»] chr1 (15 HSPs)
chr1 (13-87)||(1173087-1173160)
chr1 (13-87)||(18608653-18608728)
chr1 (6-87)||(18608766-18608848)
chr1 (13-86)||(40892488-40892561)
chr1 (19-87)||(52913221-52913290)
chr1 (33-85)||(18981086-18981138)
chr1 (13-68)||(26879667-26879723)
chr1 (13-79)||(33650595-33650663)
chr1 (31-87)||(41007460-41007516)
chr1 (35-87)||(52913338-52913390)
chr1 (13-79)||(2633351-2633418)
chr1 (5-87)||(34173325-34173407)
chr1 (32-87)||(38698944-38698999)
chr1 (31-68)||(52913173-52913210)
chr1 (31-87)||(2633239-2633295)
[»] scaffold0018 (3 HSPs)
scaffold0018 (14-87)||(161592-161666)
scaffold0018 (13-68)||(161419-161475)
scaffold0018 (5-64)||(161675-161735)
[»] scaffold0279 (2 HSPs)
scaffold0279 (13-68)||(1201-1257)
scaffold0279 (5-85)||(1124-1205)
[»] scaffold0157 (2 HSPs)
scaffold0157 (13-68)||(21786-21843)
scaffold0157 (31-87)||(21614-21670)
[»] scaffold0002 (2 HSPs)
scaffold0002 (13-87)||(12235-12307)
scaffold0002 (14-80)||(12125-12191)
[»] scaffold0578 (1 HSPs)
scaffold0578 (13-68)||(2447-2504)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 7607755 - 7607518
Alignment:
Q  5 agtttggtgtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttaggaaaagacatgtcatgc 104  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607755 agtttgatgtttgtaacatattgatttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttaggaaaagacatgtcatgc 7607656  T
Q  105 cttgttgatgtttttaatctttgtgatatggaggatttaggttacaaggggatgctttcacttgggccaacaatcaagcaaatgatcaatttattacttt 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7607655 cttggtgatgtttttaatctttgtgatatggaggatttaggttacaaggggatgctttcacttcggccaacaatcaagcaaatgatcaatttattacttt 7607556  T
Q  205 caggcttgacagatttcttgttaatcggaggtggagaa 242  Q
    |||||||||||||||| |||||||||||||||||||||    
T  7607555 caggcttgacagatttgttgttaatcggaggtggagaa 7607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 14624309 - 14624235
Alignment:
Q  12 tgtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    ||||||||| ||||| | |||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||    
T  14624309 tgtttgtaatagattagattttaagttattctggtcacacataagtcttttaagtttgtaaacgttttcaattta 14624235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 47891363 - 47891307
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  47891363 tttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaatttag 47891307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 14964904 - 14964979
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||| |||| |||||| ||||||    
T  14964904 gtttgtaacagattggtcatttaagttattttggtcacacataagtcctttaagtttgtaaaggttttcaatttag 14964979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 36667342 - 36667278
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgt 76  Q
    |||||||||||||| ||  ||||||||||||||||||| |||||||||||||||||| |||||||    
T  36667342 gtttgtaacagatttgtcctttaagttattttggtcacacataagtcttttaagtttgtaaacgt 36667278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 36375122 - 36375067
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||    
T  36375122 gtttgtaacagattgttttttaagttattttgatcatgcataagttttttaagttt 36375067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 252121 - 252194
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattt 85  Q
    |||||||||||||  || ||||||||||||||||||||  ||||||| ||||||||| ||||||||||| ||||    
T  252121 gtttgtaacagatcagtcttttaagttattttggtcacaaataagtcctttaagtttgtaaacgttttcgattt 252194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 28813931 - 28813987
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||||| ||||||    
T  28813931 tttaagttattttggtcacacataagtccttcaagtttgtaaacgttttcaatttag 28813987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 18020084 - 18020009
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||| ||||||||||||  |||||||||||||||| || ||||||||||||||||||  |||| ||||| ||||||    
T  18020084 gtttataacagattggtcgtttaagttattttggttacacataagtcttttaagtttgcaaaccttttcaatttag 18020009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 25848560 - 25848485
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||| ||||||  ||||||||||||||||||| |||| ||| ||||||||| |||| |||||| ||||||    
T  25848560 gtttgtaacacattggtcctttaagttattttggtcacacatatgtcctttaagtttgtaaatgttttcaatttag 25848485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 47069604 - 47069678
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||| ||||||| ||| ||||||||||||||| |||||||| ||| ||||  ||||||||||| ||||||    
T  47069604 tttgtaacaaattggttcttttagttattttggtcacacataagtcctttgagttcgtaaacgttttcaatttag 47069678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 43650061 - 43650134
Alignment:
Q  15 ttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||| ||||||||  |||||||||||||| |||| ||||| |||||||||||| ||||| ||||| ||||||    
T  43650061 ttgtaagagattggtcatttaagttattttgatcacacataaatcttttaagtttgtaaacattttcgatttag 43650134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 26724104 - 26724160
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||  ||||||| ||||||||| |||| |||||| ||||||    
T  26724104 tttaagttattttggtcacatataagtcctttaagtttataaaagttttcaatttag 26724160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 26976539 - 26976491
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| |||||    
T  26976539 tttaagttattttggtcacacataagtcatttaagtttgtaaatgtttt 26976491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 32186556 - 32186612
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| || || |||||||| ||||||||| ||||||||||| ||||||    
T  32186556 tttaagttatttttgtaacacataagtcctttaagtttttaaacgttttcgatttag 32186612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 40209929 - 40209862
Alignment:
Q  19 aacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| ||| |||||||||||| |||||||| |||||||||  ||| |||||| ||||||    
T  40209929 aacagattggtttt-aagatattttggtcacacataagtcgtttaagtttgcaaaagttttcaatttag 40209862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 50332527 - 50332583
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| ||||  ||||||| ||||||||| ||||||||||| ||||||    
T  50332527 tttaagttattttgatcacatataagtcatttaagtttgtaaacgttttcaatttag 50332583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 13903066 - 13902991
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||| ||| || ||||||||||||||||| ||  ||||||| ||||| ||| ||||||||||| ||||||    
T  13903066 gtttgtaacatattagtcttttaagttattttggttacatataagtcctttaaatttgtaaacgttttcaatttag 13902991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 25848382 - 25848437
Alignment:
Q  32 ttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||| || || |||||||||||| ||||||||| | ||||||    
T  25848382 ttaagttattttggtcacacaaaaatcttttaagtttgtaaacgtttgcgatttag 25848437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 30955067 - 30955012
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||| || ||||||||||||||||||| |||||||| |||| ||||    
T  30955067 gtttgtaatagattagtgtttaagttattttggtcacacataagtcctttatgttt 30955012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 30970879 - 30970824
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||| || ||||||||||||||||||| |||||||| |||| ||||    
T  30970879 gtttgtaatagattagtgtttaagttattttggtcacacataagtcctttatgttt 30970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 32186735 - 32186660
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||| |||| | ||||||||||||||||| || ||||| |  ||||||||| ||||||||||| ||||||    
T  32186735 gtttgtaacatattgatgttttaagttattttggttacacataaattctttaagtttgtaaacgttttcaatttag 32186660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 47069791 - 47069716
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  ||||||| | ||| |||||  ||||||| ||||||||| ||||||||||| ||||||    
T  47069791 gtttgtaacagattggtcatttaagtgaatttcgtcacatataagtcctttaagtttgtaaacgttttcaatttag 47069716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 3169544 - 3169618
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||| ||||||  ||||||||||||||||||  || | ||||||||||||| |||| |||||| ||||||    
T  3169544 tttgtaacatattggtcctttaagttattttggtcatacacaggtcttttaagtttgtaaatgttttcaatttag 3169618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 26724256 - 26724198
Alignment:
Q  30 ttttaagttattttggtcacgcataagt-cttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||  || |||| ||||||||||| ||||||||||| ||||||    
T  26724256 ttttaagttattttggtcatacacaagttcttttaagtttataaacgttttcaatttag 26724198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 27657997 - 27658062
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttt 78  Q
    |||||| ||| ||| |||||||||||||||  ||||| ||||| || ||||||||| |||||||||    
T  27657997 gtttgtcacacattagtttttaagttatttcagtcacacataaatcatttaagtttgtaaacgttt 27658062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 40209768 - 40209824
Alignment:
Q  30 ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||| ||||| |||| |||||||| ||||||||| ||||||||||| ||||||    
T  40209768 ttttaagttgttttgttcacacataagtc-tttaagtttgtaaacgttttcaatttag 40209824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 3169728 - 3169784
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||| ||||||||||||| |||||  |||| ||||||||||||    
T  3169728 gtttgtaatagattggttctttaagttattttagtcacatataaatcttttaagttt 3169784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 18020144 - 18020088
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| |||||| || ||||||||||||||||||  |||||||| |||||||||    
T  18020144 gtttgtaatagattgattatttaagttattttggtcaaacataagtcctttaagttt 18020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 39714681 - 39714625
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagt-cttttaagttt 68  Q
    |||| |||||||||| | ||||||||||||||||||| ||||| | |||||||||||    
T  39714681 gtttttaacagattgatgtttaagttattttggtcacacataaatccttttaagttt 39714625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 40286332 - 40286388
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| || ||||| ||||||||| ||||  ||||| ||||||    
T  40286332 tttaagttattttggtcacacagaagtcctttaagtttgtaaatattttcgatttag 40286388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 40286509 - 40286436
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||| |||| ||||||||| ||||  |||||||  ||||||||| ||||| ||||| ||||||    
T  40286509 gtttgtaacagattggtcttttgagttattttagtca--cataagttctttaagtttgtaaacattttcaatttag 40286436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 46337517 - 46337573
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| |||| || ||||| ||||||||||||| |||||||| |||||||||    
T  46337517 gtttgtaacatattgattctttaaattattttggtcacacataagtcctttaagttt 46337573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 47891124 - 47891180
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||| | |||||| ||||||||||||| | |||||| |||||||||    
T  47891124 gtttgtaacagattgatcttttaaattattttggtcacacctaagtcatttaagttt 47891180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 47891203 - 47891259
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||| |  || |||||||||||||| |||| |||||| ||||||    
T  47891203 tttaagttattttggtcgcatattagtcttttaagtttgtaaatgttttcgatttag 47891259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 50332763 - 50332699
Alignment:
Q  5 agtttggtgtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||| ||||||||| | |||| | ||||||||||||||||| || |||||||| |||||||||    
T  50332763 agtttgatgtttgtaataaattgatcttttaagttattttggttacacataagtcctttaagttt 50332699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 17136919 - 17136994
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||  || ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  17136919 gtttgtaacagattaattctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaatttag 17136994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 21598708 - 21598633
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||| ||||||  ||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  21598708 gtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttag 21598633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 364258 - 364199
Alignment:
Q  14 tttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaa 73  Q
    ||||||| |||||| | ||||||||||||||||||| |||||||||||||||||| ||||    
T  364258 tttgtaatagattgatctttaagttattttggtcacacataagtcttttaagtttgtaaa 364199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 21598520 - 21598595
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  |||||||||||||| || | |||||||| ||||||||| ||||||||||| ||||||    
T  21598520 gtttgtaacagattggtcctttaagttattttgatcccacataagtcctttaagtttataaacgttttcgatttag 21598595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 9982746 - 9982820
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| |  ||| ||||||||||||| | |||||||||||||||||| ||||||||||| ||||||    
T  9982746 tttgtaacagattgatcctttgagttattttggtcgcacataagtcttttaagtttgtaaacgttttcaatttag 9982820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 2761494 - 2761551
Alignment:
Q  30 ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||||||||| ||||||    
T  2761494 ttttaagttattttgatcacacataagtcctttaagtttgtaaacgttttcaatttag 2761551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 10356328 - 10356392
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||    
T  10356328 agtttgatatttgtaacagattggttctttaagttattttggtcacacttaagtcctttaagttt 10356392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 17342684 - 17342628
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||| |||||| |||||||| ||||||||| ||||||||||| ||||||    
T  17342684 tttaagttatttcggtcacacataagtcctttaagtttgtaaacgttttcaatttag 17342628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 35050630 - 35050686
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||||    
T  35050630 tttaagttatttttgtcacacataaatcttttaagtttataaacgttttcgatttag 35050686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 35225473 - 35225549
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttagg 88  Q
    |||||||||||||||||  ||||||||||| || |||| |||||||  ||||||||| ||||||||||| |||||||    
T  35225473 gtttgtaacagattggtcctttaagttattctgatcacacataagttctttaagtttgtaaacgttttcgatttagg 35225549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 364061 - 364128
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    ||||||||||||||| |||||||||| ||||||||||  ||||||  ||||||||| ||||| |||||    
T  364061 gtttgtaacagattgatttttaagttgttttggtcacaaataagttctttaagtttgtaaacattttc 364128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 13812457 - 13812383
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataag-tcttttaagtttctaaacgttttccattta 86  Q
    ||||||||||||||| |||||||||||| ||||||| || |||| |||||||||||| ||||  ||||| |||||    
T  13812457 gtttgtaacagattgatttttaagttatgttggtcatgcgtaagttcttttaagtttgtaaatcttttcaattta 13812383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 10356523 - 10356450
Alignment:
Q  14 tttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||||||||| |||||||||||||| | ||| |||||||| ||||||||| ||||  ||||| |||||    
T  10356523 tttgtaacagattggtcttttaagttatttttgccacacataagtcctttaagtttgtaaaacttttcaattta 10356450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 19557961 - 19557905
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  |||||  |||||||||||| ||||||||||||||||||    
T  19557961 gtttgtaacagattggtcctttaaaatattttggtcacacataagtcttttaagttt 19557905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 24059759 - 24059807
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    ||||| ||||||||||||| |||||||| ||||||||| ||||||||||    
T  24059759 tttaaattattttggtcacacataagtcctttaagtttgtaaacgtttt 24059807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 13273328 - 13273253
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  ||||||||||||| ||||| |||||||  ||||||||| | ||| ||||| ||||||    
T  13273328 gtttgtaacagattggtcatttaagttatttttgtcacacataagttctttaagtttgtgaactttttcaatttag 13273253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 2761646 - 2761589
Alignment:
Q  30 ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||| ||||||||| |||| ||||| || ||||||||| ||||||||||| ||||||    
T  2761646 ttttaggttattttgatcacacataaatcctttaagtttgtaaacgttttcaatttag 2761589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 9982973 - 9982936
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  9982973 tttaagttattttggtcacacataagtcctttaagttt 9982936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 35050884 - 35050847
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  35050884 tttaagttatttaggtcacgcataagtcctttaagttt 35050847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 10356584 - 10356528
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  |||| ||||||||||| || |||||||| |||||||||    
T  10356584 gtttgtaacagattggtcctttaggttattttggtaacacataagtcctttaagttt 10356528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 17342534 - 17342590
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||| |||||| |||||||| ||||||||| |||  |||||| ||||||    
T  17342534 tttaagttatttcggtcacacataagtcctttaagtttgtaagtgttttcaatttag 17342590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 21598768 - 21598712
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  |||||||||||||| || | |||||||| |||||||||    
T  21598768 gtttgtaacagattggtcctttaagttattttgttctcacataagtcctttaagttt 21598712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 45038438 - 45038363
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  45038438 gtttgtaacagattggtcctttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcgatttag 45038363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 17232003 - 17232078
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||  || ||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||    
T  17232003 gtttgtaacagataagtcttttaagttattttgatcacacataagtcttttaagtttgtaaacgttttcaatttag 17232078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 41083312 - 41083241
Alignment:
Q  17 gtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||||||||||| |||||| |||||||| ||||||||| ||||||||||| ||||||    
T  41083312 gtaacagattggtcttttaagttatttcggtcacacataagtcctttaagtttgtaaacgttttcgatttag 41083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 24684308 - 24684235
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||| |||||||||  ||||| |||||||| ||||||||| ||||||||||| ||||||    
T  24684308 gtttgtaacagattggtttt-aagttatttcagtcacacataagtcctttaagtttataaacgttttcgatttag 24684235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 51950545 - 51950620
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||| ||||||| | |||||||||||||||||||| |||||||| ||||||||| |||| |||||| ||||||    
T  51950545 gtttgtagcagattgatcttttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaatttag 51950620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 9999357 - 9999431
Alignment:
Q  5 agtttggtgtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |  ||||||||| ||||||||||    
T  9999357 agtttgatgtttctaacatattggtttttaagttatattggtcacacataaattctttaagtttgtaaacgtttt 9999431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 12592255 - 12592329
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||    
T  12592255 tttgtaacagattgatcatttaagttattttggtcacacataaatcttgtaagtttgtaaacgttttcaatttag 12592329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 40395174 - 40395247
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattt 85  Q
    |||||||||| ||| ||| ||||||||||||||||||| ||||| |||||||||||| ||| ||||||| ||||    
T  40395174 gtttgtaacatattagttctttaagttattttggtcacacataaatcttttaagtttgtaagcgttttcaattt 40395247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 53863578 - 53863505
Alignment:
Q  15 ttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||| ||||||  |||||||||||||||||| ||||||||| ||||||||| |||| |||||| ||||||    
T  53863578 ttgtaacaaattggtcctttaagttattttggtcatgcataagtcctttaagtttgtaaaagttttcaatttag 53863505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 2787962 - 2788028
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    |||||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  2787962 gtttgtaacatatttgtttt-aagttattttggtcacacataagtcatttaagtttgtaaatgttttc 2788028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 12592452 - 12592377
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||| |||||| | ||||||||||| |||||||  |||||||||||||||||| |||| |||||| ||||||    
T  12592452 gtttgtaatagattgatcttttaagttatattggtcatacataagtcttttaagtttgtaaaagttttcgatttag 12592377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 24684142 - 24684197
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||||||||| || ||||| |||||||||||| ||||||||||| |||||    
T  24684142 tttaagttattttggttacacataaatcttttaagtttgtaaacgttttcaattta 24684197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 26782360 - 26782442
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||| | ||||||||||||||||  ||||||||||||||||||| | |||||||||||||||| ||||  ||||| ||||||    
T  26782360 agtttgatatttgtaacagattggtcctttaagttattttggtcacac-taagtcttttaagtttgtaaaaattttcaatttag 26782442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 12498634 - 12498691
Alignment:
Q  13 gtttgtaacagattggt--ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||  |||||||||||||| ||||| ||||||||||||||||||    
T  12498634 gtttgtaatagattggtccttttaagttatttttgtcacacataagtcttttaagttt 12498691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 26782538 - 26782480
Alignment:
Q  29 tttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||| |||||| ||||||    
T  26782538 tttttaagttatttttgtcacatataagtcttttaagtttgtaaaagttttcaatttag 26782480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 41083129 - 41083195
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttt 78  Q
    |||||||||| ||||||  |||||||||||||| |||| |||||||| ||||||||| |||||||||    
T  41083129 gtttgtaacatattggtcctttaagttattttgatcacacataagtcctttaagtttgtaaacgttt 41083195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 45787279 - 45787221
Alignment:
Q  29 tttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||| |||| ||||||| ||||||||||  |||||||||| ||||||    
T  45787279 tttttaagttattttgatcacacataagttttttaagtttgcaaacgttttcaatttag 45787221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 53863393 - 53863467
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||  ||||||||||||| ||||| |||||||| ||||||||| |||| | |||| ||||||    
T  53863393 tttgtaacagattggtcctttaagttattttagtcacacataagtcctttaagtttgtaaaagatttcaatttag 53863467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 12592195 - 12592228
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  12592195 gtttgtaacagattggtttttaagttattttggt 12592228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 2469914 - 2469970
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||| ||||||||||||||||||| | |||||| |||||||||    
T  2469914 gtttgtaatagattggttctttaagttattttggtcacacctaagtcctttaagttt 2469970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 7246346 - 7246290
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| |||||| |||||||||||||||||||  |||||||| |||||||||    
T  7246346 gtttgtaacatattggtcttttaagttattttggtcatacataagtcctttaagttt 7246290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 12498863 - 12498807
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||| |||||| |||||| |||||||||||||| ||| ||||||||||| ||||||    
T  12498863 tttaaattatttcggtcacacataagtcttttaaatttgtaaacgttttcgatttag 12498807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 9999552 - 9999477
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  ||||||||||||| |||||  ||||||| ||||| ||| |||| |||||| ||||||    
T  9999552 gtttgtaacagattggtcatttaagttatttttgtcacatataagtcatttaactttgtaaaagttttcaatttag 9999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 40395361 - 40395286
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| ||  ||||||||||||  ||||| |||||||| ||||| ||| ||||||||||| ||||||    
T  40395361 gtttgtaacagattagtcctttaagttatttctgtcacacataagtcctttaaatttgtaaacgttttcgatttag 40395286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 50290441 - 50290404
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  50290441 tttaagttattttggtcacacataagttttttaagttt 50290404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 2788216 - 2788160
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| |||| | |||||||||||||||||||| ||||| || |||||||||    
T  2788216 gtttgtaacaaattgatattttaagttattttggtcacacataaatcctttaagttt 2788160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 7246059 - 7246123
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||| | ||||||||| ||||||  |||||||||||||||| || |||||||| |||||||||    
T  7246059 agtttgatatttgtaacaaattggtcgtttaagttattttggttacacataagtcctttaagttt 7246123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 24369307 - 24369251
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||| | |||||| ||||||||| |||| |||||| ||||||    
T  24369307 tttaagttattttagtcacacctaagtcctttaagtttgtaaatgttttcgatttag 24369251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 41083376 - 41083320
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  |||||||||||||||||||  ||| ||| |||||||||    
T  41083376 gtttgtaacagattggtcctttaagttattttggtcacatatatgtcatttaagttt 41083320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 41519395 - 41519347
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||| ||||    
T  41519395 tttaagtcattttagtcacacataagtcttttaagtttgtaaacatttt 41519347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 31630140 - 31630215
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |  ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  31630140 gtttgtaacagattgatcctttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcgatttag 31630215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 31630332 - 31630263
Alignment:
Q  17 gtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||| |||||| ||||||    
T  31630332 gtaatagattggtttttaagttattttggtcacacataagtc-tttaagtttgtaaatgttttcaatttag 31630263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 9500980 - 9501055
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| | || ||||||||||||| ||||| |||||||| ||||||||| ||||||||||| ||||||    
T  9500980 gtttgtaacagatcgcttctttaagttattttagtcacacataagtcctttaagtttgtaaacgttttcgatttag 9501055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 4188657 - 4188711
Alignment:
Q  32 ttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||| |||||    
T  4188657 ttaagttattttggtcacacacaagtcctttaagtttctaaacgttttcaattta 4188711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 11791842 - 11791786
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| |||||||| | ||||||| ||||||||||| ||||||    
T  11791842 tttaagttattttggtcacacataagtcctataagtttgtaaacgttttcaatttag 11791786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 36217263 - 36217209
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||    
T  36217263 gtttgtaacaaattgatttt-aagttattttggtcacacataagtcttttaagttt 36217209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 36694576 - 36694515
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaa 73  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||||| ||||||||| ||||    
T  36694576 gtttgtaacagattggtcctttaaattattttggtcacacataagtcctttaagtttgtaaa 36694515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 5009257 - 5009313
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| |||| ||||||||||||| |||| |||| |||||| ||||||    
T  5009257 tttaagttattttgatcacacataagtcttttatgtttgtaaatgttttcaatttag 5009313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 25895159 - 25895103
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||| |||||||| ||| ||||| ||||||||||| ||||||    
T  25895159 tttaagttattttagtcacacataagtcctttcagtttgtaaacgttttcaatttag 25895103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 25895238 - 25895182
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  ||||||||||||||||||| || ||||| |||||||||    
T  25895238 gtttgtaacagattggtcctttaagttattttggtcacacaaaagtcctttaagttt 25895182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 8035516 - 8035465
Alignment:
Q  28 gtttttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    ||||||||||||||||||| |  ||||||| |||||||||| ||||||||||    
T  8035516 gtttttaagttattttggttatacataagttttttaagtttgtaaacgtttt 8035465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 43699482 - 43699435
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttt 78  Q
    ||||| ||||||||||||| |||||||||||||||||| |||| ||||    
T  43699482 tttaatttattttggtcacacataagtcttttaagtttgtaaatgttt 43699435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 5009173 - 5009230
Alignment:
Q  13 gtttgtaacagattggt--ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||  ||||||||||||||| |||| |||||||| |||||||||    
T  5009173 gtttgtaatagattggtccttttaagttattttgttcacacataagtcatttaagttt 5009230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 14166446 - 14166376
Alignment:
Q  17 gtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||| |||| |||||||||||| ||| |||| |||||  | ||||||||| ||||||||||| ||||||    
T  14166446 gtaacaaattgatttttaagttatcttgttcacacataaaccctttaagtttttaaacgttttcaatttag 14166376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 36217205 - 36217155
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtctttta 63  Q
    ||||||||||||||| | ||||| ||||||||||||| |||||||| ||||    
T  36217205 gtttgtaacagattgatctttaaattattttggtcacacataagtcattta 36217155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 36694390 - 36694463
Alignment:
Q  14 tttgtaacagattggtttttaagttattttggtcacgcataagt-cttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||| ||||||||||||||||  |||||| ||||||||||| ||||  ||||| ||||||    
T  36694390 tttgtaacagattagtttt-aagttattttggtcacatataagtccttttaagtttgtaaatattttcaatttag 36694463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 4189056 - 4189000
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| ||||  |||||||  |||||||| ||||||||||| ||||||    
T  4189056 tttaagttattttgatcacatataagtccattaagtttataaacgttttcaatttag 4189000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 4511940 - 4511996
Alignment:
Q  29 tttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattt 85  Q
    |||||||||||||||| ||||  ||||||| ||||||||| ||||| ||||| ||||    
T  4511940 tttttaagttattttgatcacatataagtcctttaagtttgtaaacattttcaattt 4511996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 5009416 - 5009361
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||| ||||| || ||||||||| ||||||||||| ||||||    
T  5009416 tttaagttatttttgtcacacataa-tcctttaagtttgtaaacgttttcaatttag 5009361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 30265473 - 30265529
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||| |||| ||||| |||||||  ||||||||| ||||||||||| ||||||    
T  30265473 tttaagttctttttgtcacacataagtgctttaagtttgtaaacgttttcaatttag 30265529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 33847693 - 33847621
Alignment:
Q  16 tgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||  ||||| ||||||||||| |  ||||||| ||||||||| ||||| ||||| ||||||    
T  33847693 tgtaacagattggtcctttaaattattttggtcgcatataagtcctttaagtttttaaacattttcaatttag 33847621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33847763 - 33847703
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaa 64  Q
    |||||| ||||||||||| |||| |  ||||||||||||||||||| |||||||| |||||    
T  33847763 agtttgatgtttgtaacatattgttcctttaagttattttggtcacacataagtcctttaa 33847703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 28559310 - 28559384
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||    
T  28559310 gtttgtaacagattggtcctttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaattta 28559384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 16327173 - 16327248
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  |||||||||||||||| || |||||||| ||||||||| ||||||||||| ||||||    
T  16327173 gtttgtaacagattggtcgtttaagttattttggtaacacataagtcctttaagtttgtaaacgttttcaatttag 16327248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 7209882 - 7209938
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  7209882 tttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttag 7209938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 1996209 - 1996292
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||| |||||||| ||||| ||  ||||||||||||||||||| |||||||| | ||||||| ||||||||||| ||||||    
T  1996209 agtttggggtttgtaatagattagtcctttaagttattttggtcacacataagtcctataagtttgtaaacgttttcaatttag 1996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 25456350 - 25456425
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  |||||||||||||||||||  ||||||||||||||||  |||| |||||| ||||||    
T  25456350 gtttgtaacagattggtcctttaagttattttggtcacaaataagtcttttaagttggtaaatgttttcgatttag 25456425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 23661946 - 23662019
Alignment:
Q  5 agtttggtgtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||||| | ||||| |||||||| |||| |||||||||||||||| |||||||||||||||||| |||| |||||    
T  23661946 agtttgatatttgtgacagattgatttt-aagttattttggtcacacataagtcttttaagtttgtaaaagtttt 23662019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 23796624 - 23796551
Alignment:
Q  5 agtttggtgtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||||| | ||||| |||||||| |||| |||||||||||||||| |||||||||||||||||| |||| |||||    
T  23796624 agtttgatatttgtgacagattgatttt-aagttattttggtcacacataagtcttttaagtttgtaaaagtttt 23796551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 35813560 - 35813486
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| ||||||||||||||||| |||  |||||||| |||||| || |||| |||||| ||||||    
T  35813560 gtttgtaacagatttgtttttaagttattttgctcatacataagtcatttaagattgtaaatgttttcaatttag 35813486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 12713131 - 12713072
Alignment:
Q  30 ttttaagttattttggtcacgcat-aagtc-ttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||    
T  12713131 ttttaagttattttggtcacgcataaagtctttttaagtttgtaaacgttttcaatttag 12713072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 12774395 - 12774336
Alignment:
Q  30 ttttaagttattttggtcacgcat-aagt-cttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||    
T  12774395 ttttaagttattttggtcacgcataaagtccttttaagtttgtaaacgttttcaatttag 12774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 16327361 - 16327286
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |  |||||||||||||||||||  ||||||  ||||||||| ||||||||||| ||||||    
T  16327361 gtttgtaacagattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacgttttcaatttag 16327286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 28559498 - 28559423
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||| ||||||||||||  ||||| ||||||| ||||| |||||||| ||||||||| ||||||||||| ||||||    
T  28559498 gtttataacagattggtcctttaaattattttagtcacacataagtcctttaagtttataaacgttttcaatttag 28559423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 36759670 - 36759753
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||| ||||||||||||||  ||| ||||| |||||||||||||  ||||||| ||||||||| |||| |||||| ||||||    
T  36759670 agtttgatgtttgtaacagataagttctttaaattattttggtcacttataagtcctttaagtttgtaaatgttttcaatttag 36759753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 4943144 - 4943086
Alignment:
Q  30 ttttaagttattttggtcacgcataag-tcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||| ||||| ||||||    
T  4943144 ttttaagttattttggtcacacataagttcttttaagtttgtaaacattttcaatttag 4943086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 38682845 - 38682792
Alignment:
Q  34 aagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| || |||||||||||||||||| ||||| ||||| ||||||    
T  38682845 aagttattttggttacacataagtcttttaagtttgtaaacattttcgatttag 38682792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 12712428 - 12712480
Alignment:
Q  5 agtttggtgtttgtaacagattggtttttaagttattttggtcacgcataagt 57  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||| |||||||    
T  12712428 agtttgatgtttgtaatagattgatttttaagttattttgatcacacataagt 12712480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 12773692 - 12773744
Alignment:
Q  5 agtttggtgtttgtaacagattggtttttaagttattttggtcacgcataagt 57  Q
    |||||| ||||||||| |||||| |||||||||||||||| |||| |||||||    
T  12773692 agtttgatgtttgtaatagattgatttttaagttattttgatcacacataagt 12773744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 19550114 - 19550170
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| |||||| || |||||||||||||||| || ||||||||||||||||||    
T  19550114 gtttgtaatagattgattctttaagttattttggtgacacataagtcttttaagttt 19550170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 20927939 - 20927995
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||||   |||||||||||||||| ||||| ||||| ||||||    
T  20927939 tttaagttattttggtcacaagtaagtcttttaagtttgtaaacattttcgatttag 20927995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 23661894 - 23661950
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||| | ||||||||||||||||| || |||||||| |||||||||    
T  23661894 gtttgtaacagattgatcttttaagttattttggttacacataagtcctttaagttt 23661950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23796676 - 23796620
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||| | ||||||||||||||||| || |||||||| |||||||||    
T  23796676 gtttgtaacagattgatcttttaagttattttggttacacataagtcctttaagttt 23796620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 35812238 - 35812182
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||  ||||| |||||||||||||||||||||| |||||||||    
T  35812238 gtttgtaatagattggtcctttaaattattttggtcacgcataagtcatttaagttt 35812182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 36760841 - 36760785
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||| |||||| |||||||||||| ||||| ||||| ||||| ||||||    
T  36760841 tttaagttatttcggtcacacataagtctttttagtttgtaaacattttcaatttag 36760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 5746170 - 5746237
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||| ||||||||||||  |||||||||||||||| |  |||||||| ||||||||| ||||||||||    
T  5746170 gtttataacagattggtcatttaagttattttggtaaaacataagtcctttaagtttgtaaacgtttt 5746237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 10827143 - 10827178
Alignment:
Q  33 taagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10827143 taagttattttggtcacacataagtcttttaagttt 10827178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 10827183 - 10827218
Alignment:
Q  14 tttgtaacagattggtttttaagttattttggtcac 49  Q
    |||||||||||||||| |||||||||||||||||||    
T  10827183 tttgtaacagattggtctttaagttattttggtcac 10827218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 25456291 - 25456346
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| ||||||  ||||||||||||| |||| |||||||| |||||||||    
T  25456291 gtttgtaacatattggtccttaagttattttgatcacacataagtcctttaagttt 25456346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 25456596 - 25456541
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| |  |||||||||    
T  25456596 gtttgtaacagattggtctttaagttattttagtcacacataaatactttaagttt 25456541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 28022191 - 28022136
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||||||||||||||||||| | ||||| ||| ||||| ||||| |||||    
T  28022191 tttaagttattttggtcacgcataagccctttaaatttgtaaacattttcgattta 28022136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 35461511 - 35461586
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  ||||| |||||||| ||||  ||||||| ||||||||| |||| |||||| ||||||    
T  35461511 gtttgtaacagattggtcctttaaattattttgatcacaaataagtcctttaagtttgtaaaagttttcgatttag 35461586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 10827366 - 10827292
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| |  ||||| |||||||||||||  | ||||| ||||||||| ||||||||||| ||||||    
T  10827366 tttgtaacagattgatcctttaaattattttggtcacaaacaagtcctttaagtttgtaaacgttttcgatttag 10827292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 35813620 - 35813566
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagt 66  Q
    |||||||||||||| ||| |||||||||||||||| || |||||||| |||||||    
T  35813620 gtttgtaacagattagttatttaagttattttggttacacataagtcctttaagt 35813566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 5746351 - 5746302
Alignment:
Q  30 ttttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||||| ||||||||||||  |||||||| ||||||||| ||||||||||    
T  5746351 ttttaaattattttggtcatacataagtcatttaagtttgtaaacgtttt 5746302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 20928119 - 20928082
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  20928119 tttaagttattttggtcacacataagtcctttaagttt 20928082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 35187993 - 35188042
Alignment:
Q  30 ttttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||| ||||    
T  35187993 ttttaagttattttggtcacacataaatcatttaagtttgtaaacatttt 35188042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 35813386 - 35813431
Alignment:
Q  35 agttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    ||||||||| ||||| |||||||| ||||||||| |||||||||||    
T  35813386 agttattttagtcacacataagtcctttaagtttgtaaacgttttc 35813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 1649451 - 1649403
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttt 61  Q
    |||| ||||| ||||||||||||| |||||||||||  |||||||||||    
T  1649451 gtttataacatattggtttttaagctattttggtcagacataagtcttt 1649403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 7210308 - 7210260
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    ||||||||||||||||  | |||||||| ||||||||| ||||||||||    
T  7210308 tttaagttattttggttgcacataagtcatttaagtttgtaaacgtttt 7210260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 35461758 - 35461706
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaa 64  Q
    |||||||| ||||||||  ||||||||||||||||||| |||||||| |||||    
T  35461758 gtttgtaatagattggtcctttaagttattttggtcacacataagtcatttaa 35461706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 37642888 - 37642944
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||| |  |||| || ||||||||| ||||||||||| ||||||    
T  37642888 tttaagttattttggtctcaaataaatcctttaagtttgtaaacgttttcgatttag 37642944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 27127949 - 27128024
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||| ||||||||| |||| |||||| ||||||    
T  27127949 gtttgtaacagattgattctttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaatttag 27128024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 15563860 - 15563915
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||    
T  15563860 gtttgtaacagattaatttttaagttattttagtcacacataagtcttttaagttt 15563915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 24827424 - 24827507
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||| ||||||||| ||||| ||  ||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||    
T  24827424 agtttgatgtttgtaatagatttgtcatttaagttattttagtcacacataagtcttttaaatttgtaaacgttttcgatttag 24827507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 6220444 - 6220371
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||  ||||||||||| ||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  6220444 tttgtaacagattggtactttaagttattgtggtcacacataagtcctttaagttt-taaacgttttcaatttag 6220371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 41151484 - 41151555
Alignment:
Q  17 gtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||  ||||||||||||||||||| |||||||| |||| |||| |||| |||||| ||||||    
T  41151484 gtaacagattggtcctttaagttattttggtcacacataagtcctttatgtttgtaaatgttttcaatttag 41151555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 41151668 - 41151605
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacg 75  Q
    |||||||||||||||||  |||||||| |||||||||| |||||||| ||||||||| ||||||    
T  41151668 gtttgtaacagattggtcctttaagttcttttggtcacacataagtcctttaagtttgtaaacg 41151605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 27128120 - 27128062
Alignment:
Q  29 tttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||||| ||||||| |||| ||| | ||||||||||| ||||||    
T  27128120 tttttaagttattttggtcacacataagttttttcagtctgtaaacgttttcaatttag 27128062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 9400070 - 9400013
Alignment:
Q  31 tttaagttattttggtcacgcataagt-cttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||    
T  9400070 tttaagttattttggtcacacataagtccttttaagtttgtaaaccttttcaatttag 9400013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 24909666 - 24909605
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaa 73  Q
    ||||||| |||||||||  ||||| |||||||||||||||||||||| ||||||||| ||||    
T  24909666 gtttgtagcagattggtcctttaaattattttggtcacgcataagtcctttaagtttgtaaa 24909605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 29428017 - 29427952
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgtt 77  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||| ||||||||| || |||||    
T  29428017 gtttctaacagattggtcttttaagttattttggtcatacataagtcctttaagtttgtacacgtt 29427952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 20209338 - 20209410
Alignment:
Q  16 tgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |||||||||||||||||||  |||| |  ||||||||| ||||| ||||| ||||||    
T  20209338 tgtaacagattggttctttaagttattttggtcacaaataaatactttaagtttgtaaacattttctatttag 20209410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 20229046 - 20229118
Alignment:
Q  16 tgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |||||||||||||||||||  |||| |  ||||||||| ||||| ||||| ||||||    
T  20229046 tgtaacagattggttctttaagttattttggtcacaaataaatactttaagtttgtaaacattttctatttag 20229118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 27128197 - 27128142
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||||||| ||||||||| |||| || ||||| |||||||||    
T  27128197 gtttgtaatagattggtttttaggttattttgatcacacacaagtcctttaagttt 27128142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 28618880 - 28618825
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||||||||||||  |||| | |||||||||| ||||||||||| |||||    
T  28618880 tttaagttattttggtcacaaataaattttttaagtttgtaaacgttttcaattta 28618825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 15563941 - 15563983
Alignment:
Q  34 aagttattttggtcacgcataagtcttttaagtttctaaacgt 76  Q
    |||||||||||||||  |||||||| |||||||||||||||||    
T  15563941 aagttattttggtcatacataagtcctttaagtttctaaacgt 15563983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 24083351 - 24083297
Alignment:
Q  15 ttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||| ||||||||| |||||||||||||| |||| |||||| |||||||||||    
T  24083351 ttgtaatagattggttatttaagttattttgatcacacataaggcttttaagttt 24083297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 14550314 - 14550277
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  14550314 tttaagttattttggtcatacataagtcttttaagttt 14550277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 27127892 - 27127937
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagt 57  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||    
T  27127892 gtttgtaacagattggttatttaagttattttgatcacacataagt 27127937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 6220505 - 6220449
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| ||||||| ||||||||||||| ||||| |||||||  |||||||||    
T  6220505 gtttgtaacaaattggttctttaagttatttttgtcacacataagttctttaagttt 6220449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 9399910 - 9399965
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| |||||| |||||||| || ||||| ||||| ||||||    
T  9399910 tttaagttattttggtcacacataag-cttttaagattgtaaacattttcaatttag 9399965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 20209522 - 20209454
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    ||||||||||||||| |  |||||||||||||||||||  ||||||  ||||||||| ||||| |||||    
T  20209522 gtttgtaacagattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacattttc 20209454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 20229230 - 20229162
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    ||||||||||||||| |  |||||||||||||||||||  ||||||  ||||||||| ||||| |||||    
T  20229230 gtttgtaacagattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacattttc 20229162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 24083293 - 24083257
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcac 49  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  24083293 gtttgtaacagattgatttttaagttattttgatcac 24083257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 27052483 - 27052539
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||| ||||||  |||||||||||| |||||| |||||||| |||||||||    
T  27052483 gtttgtaacacattggtcctttaagttatttcggtcacacataagtcctttaagttt 27052539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 41151729 - 41151673
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagt-cttttaagtt 67  Q
    |||||||||||||| ||  ||||||||||||||||||| ||||||| ||||||||||    
T  41151729 gtttgtaacagattagtcctttaagttattttggtcacacataagtccttttaagtt 41151673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 6694792 - 6694718
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||| ||||||  ||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||    
T  6694792 gtttgtaacatattggtcctttaagttattttggtcacacataagtcctttaagtttataaacgttttcgattta 6694718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 29019342 - 29019398
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  29019342 tttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttag 29019398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 11975541 - 11975597
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||| ||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  11975541 tttaagttattgtggtcacacataagtcctttaagtttttaaacgttttcaatttag 11975597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 27576653 - 27576597
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||| |||||||||    
T  27576653 gtttgtaacagattggtcctttaagttattttggtcacacataagtcatttaagttt 27576597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 30869662 - 30869587
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||  |||||||||||||  |||||| |||||| ||||||||| ||||| ||||| ||||||    
T  30869662 gtttgtaacagattggtcctttaagttatttttatcacgcgtaagtcctttaagtttgtaaacattttcaatttag 30869587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 4048474 - 4048400
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||| |  |||||||||||||||| || |||||||| ||||||||| ||||| ||||| ||||||    
T  4048474 tttgtaacagattgatcatttaagttattttggttacacataagtcctttaagtttgtaaacattttcgatttag 4048400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 27576601 - 27576520
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattt 85  Q
    |||||| | |||||||| |||||||  |||| |||||||||||||| |||||||| ||||||||| |||| |||||| ||||    
T  27576601 agtttgatatttgtaactgattggtcctttaggttattttggtcacacataagtcctttaagtttgtaaaagttttcaattt 27576520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 29710642 - 29710586
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||||    
T  29710642 gtttgtaacagattggtcttttaggttattttggtaacacataagtcatttaagttt 29710586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 31453104 - 31453048
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||| ||| ||||||||||||| ||||| |||||||| |||||||||    
T  31453104 gtttgtaacagattagttatttaagttatttttgtcacacataagtcctttaagttt 31453048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 40951724 - 40951780
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||| | |||||||| ||||||||| |||||| |||| ||||||    
T  40951724 tttaagttattttggtcgcacataagtcatttaagtttgtaaacgctttcgatttag 40951780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 40951887 - 40951831
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||||| ||||| || ||||||||| ||||| ||||| ||||||    
T  40951887 tttaagttattttggtcacacataaatcatttaagtttgtaaacattttctatttag 40951831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 43258338 - 43258394
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||| ||||| ||||||| |||||||||| ||||| ||||| ||||||    
T  43258338 tttaagttatttttgtcacacataagtgttttaagtttgtaaacattttcgatttag 43258394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 44293850 - 44293922
Alignment:
Q  16 tgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| |||||||||||||||||||  |||| |  ||||||||| ||||| ||||| ||||||    
T  44293850 tgtaacagattggttctttaagttattttggtcacaaataaatactttaagtttgtaaacattttctatttag 44293922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 27280709 - 27280764
Alignment:
Q  32 ttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| || | |||||| ||||||||| ||||||||||| ||||||    
T  27280709 ttaagttattttggtaacacgtaagtcctttaagtttgtaaacgttttcgatttag 27280764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 3198286 - 3198360
Alignment:
Q  13 gtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    |||||||||| |||||| |||||||||||||||||| | |||||||  || |||||| ||||| ||||| |||||    
T  3198286 gtttgtaacaaattggtcttttaagttattttggtcccacataagttcttaaagtttgtaaacattttcaattta 3198360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 29710581 - 29710507
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||| |||||||  ||||||||||||| ||||| |||||||| ||||||||| ||||  ||||| ||||||    
T  29710581 tttgtaacggattggtcctttaagttattttcgtcacacataagtcatttaagtttgtaaaacttttcaatttag 29710507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 42312793 - 42312830
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  42312793 tttaagttattttggtcacacataagtcctttaagttt 42312830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 4048523 - 4048479
Alignment:
Q  24 attggtttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||||||| || ||||| ||||||| ||||    
T  4048523 attggtttttaagttattttggtgacacataaatcttttaggttt 4048479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 11975703 - 11975627
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagt-cttttaagtttctaaacgttttccatttag 87  Q
    ||||||||| |||||||  ||||||||||||| ||||| ||||||| ||||||||||| ||||  ||||| ||||||    
T  11975703 gtttgtaactgattggtcctttaagttatttttgtcacacataagtccttttaagtttgtaaatattttcaatttag 11975627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 44294034 - 44293966
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    ||||||||||||||| |  |||||||||||||||||||  ||||||  ||||||||| ||||| |||||    
T  44294034 gtttgtaacagattgatcctttaagttattttggtcacaaataagtactttaagtttgtaaacattttc 44293966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 1173087 - 1173160
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||| ||||| ||||||    
T  1173087 gtttataacagattagtttttaagttattttggtcacacataagtc-tttaagtttgtaaacattttcgatttag 1173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 18608653 - 18608728
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||| || ||||||||||||||||||| | |||||| ||||||||| |||| |||||| ||||||    
T  18608653 gtttgtaacagattgattctttaagttattttggtcacacttaagtcctttaagtttgtaaatgttttcaatttag 18608728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 18608848 - 18608766
Alignment:
Q  6 gtttggtgtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||| |||||||||||||||| | ||||||||||||||| |||   ||||||| ||||||||| ||||||||||| ||||||    
T  18608848 gtttgatgtttgtaacagattgatattttaagttattttgatcatagataagtcctttaagtttgtaaacgttttcaatttag 18608766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 40892561 - 40892488
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattta 86  Q
    ||||||||||||||||  |||||||||||| | |||| |||||||| ||| ||||| ||||||||||| |||||    
T  40892561 gtttgtaacagattggactttaagttatttcgatcacacataagtcatttgagtttttaaacgttttcaattta 40892488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 52913221 - 52913290
Alignment:
Q  19 aacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||  ||||||||||| | ||||| |||||||| ||||||||| ||||||||||| ||||||    
T  52913221 aacagattggtcctttaagttattctagtcacacataagtcctttaagtttgtaaacgttttcgatttag 52913290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 18981086 - 18981138
Alignment:
Q  33 taagttattttggtcacgcataagtcttttaagtttctaaacgttttccattt 85  Q
    ||||||||||||||||| |||||||| ||||||||| ||||| ||||| ||||    
T  18981086 taagttattttggtcacacataagtcctttaagtttgtaaacattttcgattt 18981138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 26879723 - 26879667
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  |||||||||||||  |||| ||||||||||||||||||    
T  26879723 gtttgtaacagattggtcatttaagttatttttatcacacataagtcttttaagttt 26879667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 33650663 - 33650595
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagt-cttttaagtttctaaacgtttt 79  Q
    |||||||| ||||||||  ||||||||||||||||| | ||||||| ||||||||||| ||||||||||    
T  33650663 gtttgtaagagattggtcctttaagttattttggtctcacataagtccttttaagtttgtaaacgtttt 33650595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 41007516 - 41007460
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||| ||| |||||||||  ||||||||||||||||| ||||||||||| ||||||    
T  41007516 tttaaattaatttggtcacatataagtcttttaagtttgtaaacgttttcaatttag 41007460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 52913390 - 52913338
Alignment:
Q  35 agttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||| |||| |||||||| ||||||||| ||||||||||| ||||||    
T  52913390 agttattttgatcacacataagtcctttaagtttgtaaacgttttctatttag 52913338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 2633418 - 2633351
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgtttt 79  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||||| ||||| ||| ||||| ||||    
T  2633418 gtttgtaacatatttgttctttaagttatttttgtcacgcataagtcctttaaatttgtaaacatttt 2633351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 34173325 - 34173407
Alignment:
Q  5 agtttggtgtttgtaacagattggt-ttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||| ||||||||||||||||||  |||||||||||||||| ||  ||||||| ||||| ||| | ||||||||| ||||||    
T  34173325 agtttgatgtttgtaacagattggtcctttaagttattttggttacaaataagtcctttaaatttgt-aacgttttcgatttag 34173407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 38698944 - 38698999
Alignment:
Q  32 ttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||||| ||  |||||||||| ||| ||||||||||| ||||||    
T  38698944 ttaagttattttggtcacacacgagtcttttaaatttgtaaacgttttcaatttag 38698999  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 52913173 - 52913210
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  52913173 tttaagttattttggtcacacataagtcctttaagttt 52913210  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 2633239 - 2633295
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    |||||||||||||||| || ||||| || ||||||||| ||||| ||||| ||||||    
T  2633239 tttaagttattttggttacacataaatcatttaagtttgtaaacattttcgatttag 2633295  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 161666 - 161592
Alignment:
Q  14 tttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||  |||| |||||||||||||| |||||||| ||||||||| |||| |||||| ||||||    
T  161666 tttgtaacagattggtcctttaggttattttggtcacacataagtcctttaagtttgtaaaagttttcaatttag 161592  T

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Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 161419 - 161475
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  ||||| ||||||||||||| |||||||| |||||||||    
T  161419 gtttgtaacagattggtcctttaacttattttggtcacacataagtcctttaagttt 161475  T

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Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 161735 - 161675
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaa 64  Q
    |||||| ||||||||| |||||| |  ||||||||||||||||||| |||||||| |||||    
T  161735 agtttgatgtttgtaatagattgatcctttaagttattttggtcacacataagtcctttaa 161675  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 1257 - 1201
Alignment:
Q  13 gtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||| |||||||||    
T  1257 gtttgtaacagattggtcctttaagttattttggtcacacataagtcatttaagttt 1201  T

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Target: scaffold0279; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 1205 - 1124
Alignment:
Q  5 agtttggtgtttgtaacagattggtt-tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccattt 85  Q
    |||||| | |||||||| |||||||  |||| |||||||||||||| |||||||| ||||||||| |||| |||||| ||||    
T  1205 agtttgatatttgtaactgattggtcctttaggttattttggtcacacataagtcctttaagtttgtaaaagttttcaattt 1124  T

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Target: scaffold0157 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 21843 - 21786
Alignment:
Q  13 gtttgtaacagattggt--ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||  |||||||||||||| ||||| ||||||||||||||||||    
T  21843 gtttgtaatagattggtccttttaagttatttttgtcacacataagtcttttaagttt 21786  T

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Target: scaffold0157; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 21614 - 21670
Alignment:
Q  31 tttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||| |||||| |||||| |||||||||||||| ||| ||||||||||| ||||||    
T  21614 tttaaattatttcggtcacacataagtcttttaaatttgtaaacgttttcgatttag 21670  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 12307 - 12235
Alignment:
Q  13 gtttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttccatttag 87  Q
    ||||||||||||||||| ||||| |||||||| |||  ||||| |||||||| ||| |||| |||||| ||||||    
T  12307 gtttgtaacagattggtctttaacttattttgatca--cataaatcttttaaatttgtaaatgttttcaatttag 12235  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 12125 - 12191
Alignment:
Q  14 tttgtaacagattggtttttaagttattttggtcacgcataagtcttttaagtttctaaacgttttc 80  Q
    ||||||||| ||||||  |||||||||||| ||||| || ||||| ||||||||| ||||| |||||    
T  12125 tttgtaacaaattggtccttaagttatttttgtcacacacaagtcctttaagtttgtaaacattttc 12191  T

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Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 2504 - 2447
Alignment:
Q  13 gtttgtaacagattggt--ttttaagttattttggtcacgcataagtcttttaagttt 68  Q
    |||||||| ||||||||  ||||||||||||||| |||| |||||||| |||||||||    
T  2504 gtttgtaatagattggtccttttaagttattttgttcacacataagtcatttaagttt 2447  T

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