View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9182_high_4 (Length: 479)
Name: NF9182_high_4
Description: NF9182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9182_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 9665926 - 9665777
Alignment:
| Q |
25 |
tttaaggattttacttttacaggggttgactttcattttagtcatcaagattaggtgtatgtaagcacaatctacatatttatgtcacgtcaacaattga |
124 |
Q |
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| T |
9665926 |
tttaaggattttacttttacaggggttgactttcattttagtcatcaagattaggtgtatgtaagcacaatctacatatttatgtcacgtcaacaattga |
9665827 |
T |
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| Q |
125 |
gatagagatttgcaaaaggaataacttgagtaacgttttaatattcaagg |
174 |
Q |
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| T |
9665826 |
gatagagatttgcaaaaggactaacttgagtaacgttttaatattcaagg |
9665777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 205 - 359
Target Start/End: Complemental strand, 9665746 - 9665591
Alignment:
| Q |
205 |
cataatctcaattactaatttaagaatattgtacaaagtcaaccattttagctactaaaatgtgtaactaaaacatccaaca-ttatatttatcggacaa |
303 |
Q |
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| T |
9665746 |
cataatctcaattactaatttaagaatatcgtacgaagtcaaccattttagctactaaaatgtgtaactagaacatccaacatttatatttatcggacaa |
9665647 |
T |
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| Q |
304 |
atcatcaacttaacacaacatttattctttttaatttttattatctcaattactaa |
359 |
Q |
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| T |
9665646 |
atcgtcaacttaacacaacatttattctttttaatttttattatctcaattactaa |
9665591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 365 - 457
Target Start/End: Complemental strand, 9665141 - 9665049
Alignment:
| Q |
365 |
taaatttgcttatatttaggaccggaggaaatacatactatattgatgttagattttggtttctagaaacatttgttagccatacaatgcccc |
457 |
Q |
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| T |
9665141 |
taaatttacttatatttaagaccggaggaagtacatactgtattgatgttagattttggtttctagaaacatttgttagccatacaatgcccc |
9665049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9669728 - 9669687
Alignment:
| Q |
1 |
agaggatgatttttgtacacaaaatttaaggattttactttt |
42 |
Q |
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| T |
9669728 |
agaggatgatttttgtacacaaaatttaaggattttactttt |
9669687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 391
Target Start/End: Original strand, 9665216 - 9665251
Alignment:
| Q |
356 |
ctaaaaaactaaatttgcttatatttaggaccggag |
391 |
Q |
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| T |
9665216 |
ctaaaaaactaaatttgcttatatttaggaccggag |
9665251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 392
Target Start/End: Complemental strand, 31503661 - 31503626
Alignment:
| Q |
357 |
taaaaaactaaatttgcttatatttaggaccggagg |
392 |
Q |
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| T |
31503661 |
taaaaaactaaatttgcttatatttaggaccggagg |
31503626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 52879921 - 52879880
Alignment:
| Q |
356 |
ctaaaaaactaaatttgcttatatttaggaccggaggaaata |
397 |
Q |
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| T |
52879921 |
ctaaaaaactaaatttgcttatatttaagaccggatgaaata |
52879880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 32161667 - 32161703
Alignment:
| Q |
356 |
ctaaaaaactaaatttgcttatatttaggaccggagg |
392 |
Q |
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| T |
32161667 |
ctaaaaaactaaatttgcttatatttagaaccggagg |
32161703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 35972461 - 35972502
Alignment:
| Q |
359 |
aaaaactaaatttgcttatatttaggaccggaggaaatacat |
400 |
Q |
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| T |
35972461 |
aaaaactaaatttgcctatatttaggatcggagggaatacat |
35972502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 1875791 - 1875827
Alignment:
| Q |
356 |
ctaaaaaactaaatttgcttatatttaggaccggagg |
392 |
Q |
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| T |
1875791 |
ctaaaaagctaaatttgtttatatttaggaccggagg |
1875827 |
T |
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